Transcriptomics,Genomics

Dataset Information

33

Genome-wide analysis of transcriptome and translatome following eIF4A1 knockdown in MCF7 cells [Array]


ABSTRACT: To identify which genes were regulated by mRNA helicase activity, the effect of eIF4A1 knockdown on the MCF7 cell transcriptome and translatome was determined. eIF4A1-dependent mRNAs were highly enriched for several classes of genes with oncogenic potential, which leads to a model whereby dysregulation of mRNA unwinding contribues to the malignant phenotype in breast cancer cells via preferential translation of a subset of genes. Overall design: Total, subpolysomal and polysomal RNA was isolated from MCF7 cells treated with either control siRNAs or siRNAs directed against eIF4A1 (48h post-transfection).

INSTRUMENT(S): Illumina HumanHT-12 V4.0 expression beadchip

SUBMITTER: Roslin Russell  

PROVIDER: GSE58080 | GEO | 2014-12-01

SECONDARY ACCESSION(S): PRJNA251349

REPOSITORIES: GEO

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