Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Gated SA effect on transcriptome

ABSTRACT: We used microarrays to identify genes that respond to SA differently during the subjective morning and subjective night.

ORGANISM(S): Arabidopsis thaliana

PROVIDER: GSE61059 | GEO | 2015/06/22

SECONDARY ACCESSION(S): PRJNA260170

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Gated SA effect on transcriptome

Project description:We used microarrays to identify genes that respond to salycilic acid (SA) differently during the subjective morning and subjective night. 23-day-old wild type Arabidopsis seedlings. 24 samples total. Three biological replicates were used

2015-06-22 | E-GEOD-61059 | biostudies-arrayexpress

Transcriptional profiling of Populus leaves with altered SA levels

Project description:Salicylic acid (SA) has long been implicated in plant responses to oxidative stress. A direct assessment of SA effects in planta has been difficult, as SA-overproducing Arabidopsis mutants are compromised in growth or other developmental processes. We now report that transgenic Populus expressing a bacterial bifunctional SA synthase accumulated two to three orders of magnitude more total SA than wild type without affecting growth. Microarray experiments were performed to gauge the transcriptional responses of young source leaves to SA manipulation and/or heat stress. Differentially expressed genes due to SA perturbation or temperature treatment were identified. Co-expression network analysis was performed to identify key driver genes in SA-modulated response. Wild-type and transgenic Populus expressing cytosolic Irp9 (Irp9 line I6), plastidic Irp9 (FD-Irp9 lines F10 and F52) or NahG (NahG line N31) genes were maintained in two identical growth chambers at normal (NT, 27Â°C/17Â°C, day/night) or high (HT, 35Â°C/25Â°C) temperatures. Young source leaves at leaf plastochron index (LPI) 5 were sampled one week after the start of heat stress. Two biological replicates were used.

2013-08-01 | E-GEOD-42511 | biostudies-arrayexpress

Dyella sp. Sa strain:Sa

Project description:Dyella sp. Sa strain:Sa Genome sequencing

| PRJNA845020 | ENA

Expression data from root tips of Wildtype and Osaim1 mutant rice treated with or without salicylic acid (SA)

Project description:To determine the possible role of SA in root meristem activity, we compared the gene expression profiles of the root tip of Osaim1 and WT under control condition and SA treatment. We used microarrays to detail the global programme of gene expression underlying control condition and SA treatment between WT and Osaim1 mutant.

2017-03-22 | GSE80184 | GEO

Transcriptional profiling of wild-type (WT) and Ifnar1-SA (SA) in vitro differentiated Treg cells

Project description:Compared to wild-type (WT) Treg cells, Ifnar1-SA (SA) Treg cells have increased activity of IFN signaling pathways.

2021-08-15 | GSE182029 | GEO

Expression data from the orthotopic tumors of MES-SA

Project description:The spontaneous pulmonary metastasis model of human uterine sarcoma was established using GFP-expressed MES-SA cells. Several sublines with different metastatic potentials were generated by in vivo passaging. We used microarrays to identify the metastatic-related genes using the orthotopic tumors with different metastatic potentials.

2014-12-08 | GSE63937 | GEO

Expression data from low R:FR - SA crosstalk in Arabidopsis

Project description:Low R:FR signaling through phytochromes induces shade avoidance responses, including petiole elongation. Salicylic acid-mediated defense against pathogens is inhibited under these conditions. Using microarrays we studied the crosstalk between low R:FR and SA at the global gene expression level in Arabidopsis thaliana.

2013-04-03 | GSE45728 | GEO

Day-night rhythm in murine retinal pigment epithelium

Project description:Murine RPE transcriptomes were generated for 6 time points during a 24 hour period. Our data demonstrates that genes involved in ATP generation have a high expression at night whereas genes involved in β-oxidation and cholesterol synthesis show a high expression in the morning. Additionally, genes were identified in the glycerophospholipid metabolism pathway, suggesting the generation of glycerophospholipids at night. Finally, genes involved in intracellular trafficking with different expression patterns during the day-night cycle were identified and we identified genes involved in actin cytoskeleton building, remodelling and crosslinking with a high expression in the morning.

2019-12-01 | GSE137005 | GEO

Single cell analysis of tumor infiltrating immune cells in wild-type (WT) and Ifnar1-SA (SA) mice

Project description:Single cell analysis of tumor infiltrating CD8 T cells in wild-type (WT) and Ifnar1-SA (SA) mice identifies differentially expressed genes and signaling pathways.

2021-07-26 | GSE171055 | GEO

Transcriptional profiling of Populus leaves with altered SA levels

2013-08-01 | GSE42511 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data