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Gene expression profiling study by RNA-seq in Arabidopsis thaliana infected by Vibrio vulnificus

ABSTRACT: The objective of this study is to assess gene expression changes in Arabidopsis thaliana as time passed after Vibrio vulnificus 96-11-17M infection. We performed transcript profiling using 10 RNA-seq samples of Arabidopsis obtained at 0h, 12h, 24h, 48h, and 72h after 96-11-17M treatment. Through various statistical tests, differentially expressed genes at each time point were obtained and enriched biological functions were compared across infection time points. Many enriched functions associated with immune or defence systems of plant were common in all infection times. Compared with other gene expression data sets infected by several plant pathogens, common activated genes were small, but similar biological functions were shared between Vibrio and plant pathogen infections.

ORGANISM(S): Arabidopsis thaliana

PROVIDER: GSE61418 | GEO | 2019/10/06

REPOSITORIES: GEO

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