Transcriptomics

Dataset Information

18

Changes in gene expression specific to the depletion of major nutrients


ABSTRACT: Background: Since chemical assays of soil nutrients are unreliable the UK horticultural and agricultural industries routinely apply large amounts of inorganic fertiliser to maintain crop yields and quality. Excessive fertiliser applications are both costly and can lead to unnecessary pollution. A possible solution to this problem is to use sensor (GM or non-GM) technologies that exploit the changes in plant gene expression profiles under incipient nutrient deficiency. The aim of this project is to identify genes upregulated in the early stages of nutrient depletion. Methods: Arabidopsis ecotype Col-5 (N1644) will be grown hydroponically using established techniques. In parallel experiments NP and K will be withdrawn individually after 21 d growth. RNA will be extracted from shoots of nutrient replete (control) and nutrient depleted plants 24 h after the removal of nutrients. Shoot nutrient content will be assayed by ICP-EMS as a reference. By comparing expression profiles we will be able to differentiate between genes that are upregulated by lack of specific nutrients and those upregulated by a universal stress-response system. Promoters and transcripts of these genes will underpin the development of novel sensor technologies and knowledge of the gene expression profiles will improve our understanding of the physiology of plant mineral nutrition. Keywords: growth_condition_design Overall design: 4 samples

INSTRUMENT(S): [AG] Affymetrix Arabidopsis Genome Array

ORGANISM(S): Arabidopsis thaliana  

SUBMITTER: Nottingham Arabidopsis Stock Centre (NASC)   

PROVIDER: GSE6180 | GEO | 2007-01-22

SECONDARY ACCESSION(S): PRJNA100649

REPOSITORIES: GEO

altmetric image

Publications

Sorry, this publication's infomation has not been loaded in the Indexer, please go directly to PUBMED or Altmetric.

Similar Datasets

2007-01-08 | GSE6159 | GEO
2012-01-12 | E-GEOD-6159 | ArrayExpress
2012-01-10 | E-GEOD-6180 | ArrayExpress
2014-05-02 | E-NASC-59 | ArrayExpress
2014-05-02 | E-NASC-60 | ArrayExpress
2007-01-08 | GSE5611 | GEO
2015-04-30 | E-GEOD-5611 | ArrayExpress
2014-07-03 | E-GEOD-5611 | ExpressionAtlas
2014-06-03 | E-GEOD-54940 | ArrayExpress
2012-11-06 | E-GEOD-25161 | ArrayExpress