Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

CAGE-Seq of gonads and carcasses from D. melanogaster and D. pseudoobscura

ABSTRACT: We performed CAGE-Seq on dissected ovaries and testes as well as female and male carcasses of two species of Drosophila (D. melanogaster and D. pseudoobscura). These data are used to map transcription start sites. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf

ORGANISM(S): Drosophila melanogaster Drosophila pseudoobscura

PROVIDER: GSE66284 | GEO | 2015/02/26

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

CAGE-Seq of gonads and carcasses from D. melanogaster and D. pseudoobscura

Project description:We performed CAGE-Seq on dissected ovaries and testes as well as female and male carcasses of two species of Drosophila (D. melanogaster and D. pseudoobscura). These data are used to map transcription start sites. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf For both species, D. melanogaster and D. pseudoobscura, CAGE-Seq was performed on dissected gonads (with reproductive tracts) and remaining carcasses from wild-type adults, using Illumina GAIIx (SRA Study SRP001602, Bioproject PRJNA36315). There are eight samples. Only Drosophila melanogaster testis samples were performed in biological duplicate. See Chen ZX et al. Genome Res 2014, 24(7):1209-23.

2015-02-26 | E-GEOD-66284 | biostudies-arrayexpress

RNA-Seq of Gonads and Carcasses in D. simulans and D. pseudoobscura

Project description:We sequenced dissected ovaries and testes (with reproductive tracts) as well as female and male carcasses in two species of Drosophila in order to validate gene predictions from the ModENCODE project. Comparison of dissected reproductive tracts and remaining carcasses between D. simulans and D. pseudoobscura

2011-08-26 | E-GEOD-31302 | biostudies-arrayexpress

RNA-Seq of Gonads and Carcasses in D. simulans and D. pseudoobscura

2011-08-26 | GSE31302 | GEO

Drosophila pseudoobscura

Project description:Testes expression dysfunction in interspecies male sterile hybrids of D. pseudoobscura

| PRJNA728724 | ENA

Drosophila pseudoobscura strain:MV2-25

Project description:Drosophila pseudoobscura testes gene expression and small RNA sequencing

| PRJNA548113 | ENA

Drosophila pseudoobscura pseudoobscura strain:ST

Project description:Drosophila pseudoobscura pseudoobscura strain:ST Genome sequencing and assembly

| PRJNA753500 | ENA

Expression data from gonads of Meioc+/+ and Meioc-/-mice

Project description:Meiosis is a specialized division that is specifically engaged in germ cells. This program is finely and dichotomically regulated: germ cells enter meiosis at fetal life in ovaries (13.5 dpc) and only at post-natal life in testes (8 dpp). We used microarrays to determine the gene expression modifications in Meioc mutant gonads displaying early meiotic defects. 14.5 dpc ovaries and 8 dpp testes from Meioc+/+ and Meioc-/- mice (NMRI) were dissected and processed for RNA extraction and hybridization on Affymetrix microarrays. Two pools were analysed for each genotype and each sex. We sought to constitutes pairs (A and B) of wild type and knock-out pools from embryos and pups that were homogenous for developmental stages and from matched littermates. 10 ovaries from 5 embryos composed each pool for females and 4 testes from 4 pups composed each pool for males.

2015-11-19 | E-GEOD-66880 | biostudies-arrayexpress

Sex-biased expression of microRNAs in Drosophila pseudoobscura

Project description:Small RNA sequencing from Drosophila pseudoobscura males and virgin females.

2021-07-14 | GSE179989 | GEO

Drosophila pseudoobscura

Project description:Drosophila pseudoobscura Genome sequencing

| PRJNA492790 | ENA

Drosophila pseudoobscura

Project description:Drosophila pseudoobscura Genome sequencing

| PRJNA358242 | ENA