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From transcriptomics to phenomics to reveal adaptation response of Lactobacillus plantarum C2 in plant substrates

ABSTRACT: The aim of the study was to determine biological relevance of differentially expressed genes in Lactobacillus plantarum C2 during fermentation of plant substrates. Whole-transcriptome analysis based on customized microarray profiles has been used to determine altered transcription patterns in L. plantarum C2.

ORGANISM(S): Lactiplantibacillus plantarum

PROVIDER: GSE68188 | GEO | 2015/04/24

SECONDARY ACCESSION(S): PRJNA281996

REPOSITORIES: GEO

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From transcriptomics to phenomics to reveal adaptation response of Lactobacillus plantarum C2 in plant substrates

Project description:The aim of the study was to determine biological relevance of differentially expressed genes in Lactobacillus plantarum C2 during fermentation of plant substrates. Whole-transcriptome analysis based on customized microarray profiles has been used to determine altered transcription patterns in L. plantarum C2. L. plantarum C2 was grown (24 h at 30°C) and stored ( 21 days at 4°C) in carrot or pineapple juices to mimic the chemical composition of the respective raw matrices. De Man, Rogosa and Sharpe broth was used as the control medium for optimal growth. Samples were analyzed at the late exponential phase of growth and after storage

2015-04-24 | E-GEOD-68188 | biostudies-arrayexpress

Characterization of Lactobacillus plantarum gene expression in the acidic conditions

Project description:Characterization of Lactobacillus plantarum gene expression in the acididic conditions such as kimchi fermentation

2020-10-27 | GSE143834 | GEO

Improvement of Lactobacillus plantarum Aerobic Growth by Comprehensive Transcriptome Analysis

Project description:An aerobic Lactobacillus plantarum culture displayed growth stagnation during early growth. Transcriptome analysis revealed that regain of growth after stagnation correlated with activation of CO2-producing pathways suggesting that limiting CO2-concentration induced stagnation. Analogously providing increased CO2 gas partial pressure during aerobic fermentation prevented the temporal growth stagnation. Keywords: cell type comparison

2008-01-18 | GSE10194 | GEO

Transcriptional profile Lactobacillus plantarum WCFS1 : Oleuropein treated cells

Project description:Whole genome transcriptional profiling was used to characterize the response of Lactobacillus plantarum WCFS1 human isolate during challenge with oleuropein. Twelve independent experiments were performed and mixed at random in groups of four for total of three RNA samples. The transcriptional profile shows that Lactobacillus plantarum WCFS1 adapts its metabolic capacity to acquire certain carbohydrates and repress the expression of genes involved in fatty acid biosyntheis. The transcriptomic datasets also revealed the downregulation of genes related to the biosynthesis of capsular polysaccharides and genes coding for ABC-type transporters. In addition, induction of oligopeptide permeases is also part of the response of Lactobacillus plantarum WCFS1 to oleuropein.

2019-10-21 | GSE90719 | GEO

Trascriptomic profiles of Lactobacillus plantarum strains isolated from cheeses

Project description:Analysis of Lactobacillus plantarum stains isolated from different cheese type

2017-07-12 | GSE101169 | GEO

Improvement of Lactobacillus plantarum Aerobic Growth by Comprehensive Transcriptome Analysis

2010-05-26 | E-GEOD-10194 | biostudies-arrayexpress

Ethanol stress response in Lactobacillus plantarum WCFS1

Project description:Transcriptome profiles of control Lactobacillus plantarum WCFS1 cells were compared with 8% ethanol adapted cells and with 10 min or 30 min 8% ethanol shocked cells.

2010-01-01 | GSE17847 | GEO

The effects of Lactobacillus plantarum and E. coli on Caco2 human colonocytes genes expression

Project description:In this study, we examined Caco-2 cell gene expression after infection with E. coli (Ec), Lactobacillus plantarum (Lp) and the combination of the two (mix) Keywords: Lactobacillus plantarum and E. coli influences on Caco2 cells gene expression

2007-09-13 | GSE5874 | GEO

Proteomic analysis explores interactions between Lactobacillus plantarum and Saccharomyces cerevisiae during sourdough fermentation

Project description:proteome-based techniques were used to compare changes of single culture fermentation and co-fermentation involving Lactobacillus plantarum Sx3 and Saccharomyces cerevisiae Sq7 in sourdough

2021-02-19 | PXD024265 | iProX

Locust bean gum derived galacto-manno-oligosaccharides utilization by Lactobacillus plantarum WCFS1

Project description:In order to understand LBG derived galacto-manno-oligosaccharides utilization by a probiotic bacterium, Lactobacillus plantarum WCFS1, we have grown Lactobacillus plantarum WCFS1 (in duplicates) till mid log phase (OD600nm ~0.5, 10 h) in carbon free MRS (de Man, Rogosa Sharpe ) media containing either galacto-manno-oligosaccharides, mannose, glucose or galactose (1% w/v) as the sole carbon source.

2019-07-30 | GSE117591 | GEO

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