Genomics

Dataset Information

0

42 days old adult worms: adult worms vs. adult worms (self-self)


ABSTRACT: Recent advances in the study of Schistosoma mansoni genome and transcriptome have led to a better description of the S. mansoni gene complement. In this work, we report the design and use of a new S. mansoni 60-mer oligonucleotide microarray platform with approximately 44,000 probes, based on all publicly available cDNA sequence data for S. mansoni and S. japonicum. The large number of probes combined with the extensive sequence annotation available allowed a comprehensive approach, where most of the S. mansoni transcriptome is represented. Hybridization with adult worm RNA pointed to a set of genes transcriptionally active in this stage of the parasite life cycle. Interestingly, a large proportion (43%) of genes for which transcription was detected in adults is comprised of no match genes, i.e. S. mansoni genes with unknown function and no identifiable orthologs in GenBank. Moreover, detection of bi-directional transcription for several genes leads us to hypothesize a widespread production of antisense RNA in S. mansoni. Keywords: Expressed genes in adult worms

ORGANISM(S): Schistosoma mansoni

PROVIDER: GSE6915 | GEO | 2007/12/20

SECONDARY ACCESSION(S): PRJNA98145

REPOSITORIES: GEO

Similar Datasets

2006-07-07 | GSE5191 | GEO
2006-08-24 | GSE5233 | GEO
2012-12-30 | GSE37647 | GEO
2014-12-16 | GSE57722 | GEO
2015-05-01 | GSE66697 | GEO
2012-12-30 | E-GEOD-37647 | biostudies-arrayexpress
2015-05-01 | E-GEOD-66697 | biostudies-arrayexpress
2007-12-01 | E-MEXP-1189 | biostudies-arrayexpress
2007-12-01 | E-MEXP-1188 | biostudies-arrayexpress
2005-02-01 | E-MEXP-223 | biostudies-arrayexpress