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Large scale sequencing of PSTVd-RG1 sRNA in tomato plants

ABSTRACT: In order to analyze the production of small RNA (sRNA) by Potato spindle tuber viroid- RG1 strain (PSTVd-RG1) upon infecting the plants, the tomato plants (Lycopersicum esculentum cv. Rutgers) were inoculated with the PSTVd-RG1. After 21-days of post inoculation, total RNA was extracted and subjected for deep-sequencing using Illumina MiSeq platform. The primers were trimmed and the 21- to 24-nt long small RNA species were filtered after quality check of the raw data.

ORGANISM(S): Potato spindle tuber viroid

PROVIDER: GSE70166 | GEO | 2017/09/20

SECONDARY ACCESSION(S): PRJNA287781

REPOSITORIES: GEO

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Large scale sequencing of PSTVd-I sRNA in tomato plants

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Parallel analysis of 5'-RNA ends in PSTVd-M inoculated tomato plants

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