Transcriptomics,Genomics

Dataset Information

39

Development of colorectal cancer gene expression signatures from expression profiles of embryonic development, precancer progression and cancer samples


ABSTRACT: To further development of our gene expression signature for survival prediction, we conducted expression profiles of embryonic development, precancer progression and cancer samples. Overall design: Developing colon was obtained from 20 cases of abortion in Maternal & Child Health Care Hospital of Hai Dian between 2007 and 2009. The samples included whole embryos (WE) at 3 to 5 postovulatory weeks (PWs), early embryonic colons (EEC) at 8 to 10 PWs and middle embryonic colons (MEC) at 14 to 22 PWs.Normal colorectal mucosae samples were collected from patients with hemorrhoids who received surgical excision in the Department of Colon and Rectal Surgery of Beijing Shi Ji Tan Hospital between 2009 and 2010. Fifty two CRC samples with overall survival (OS) information were obtained as surgically excised specimens from Zhe Jiang University School of Medicine. Colonoscopy biopsy samples, including colorectal adenomas and adenocarcinomas were obtained from the Department of Endoscopy, Cancer Hospital, Chinese Academy of Medical Sciences, between 2008 and 2011.

INSTRUMENT(S): Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Probe Name version)

SUBMITTER: Kaitai Zhang  

PROVIDER: GSE71187 | GEO | 2017-02-09

SECONDARY ACCESSION(S): PRJNA290515

REPOSITORIES: GEO

altmetric image

Publications

Discovery of a Novel Immune Gene Signature with Profound Prognostic Value in Colorectal Cancer: A Model of Cooperativity Disorientation Created in the Process from Development to Cancer.

An Ning N   Shi Xiaoyu X   Zhang Yueming Y   Lv Ning N   Feng Lin L   Di Xuebing X   Han Naijun N   Wang Guiqi G   Cheng Shujun S   Zhang Kaitai K  

PloS one 20150901 9


Immune response-related genes play a major role in colorectal carcinogenesis by mediating inflammation or immune-surveillance evasion. Although remarkable progress has been made to investigate the underlying mechanism, the understanding of the complicated carcinogenesis process was enormously hindered by large-scale tumor heterogeneity. Development and carcinogenesis share striking similarities in their cellular behavior and underlying molecular mechanisms. The association between embryonic deve  ...[more]

Similar Datasets

| GSE71130 | GEO
2013-10-19 | E-GEOD-51429 | ArrayExpress
2010-03-20 | GSE15419 | GEO
2010-03-20 | E-GEOD-15419 | ArrayExpress
2011-08-31 | E-GEOD-31595 | ArrayExpress
2006-07-08 | GSE5203 | GEO
2006-07-08 | GSE5204 | GEO
| GSE5206 | GEO
2013-04-19 | E-GEOD-46200 | ArrayExpress
| GSE83687 | GEO