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Sphingobium sp. SYK-6 treated with several carbon sources II

ABSTRACT: Transcriptional profile of RNA extracted from Sphingobium sp. SYK-6 treated with 10 mM dehydrodiconiferyl alcohol (DCA), 10 mM vanillate, or SEMP (10 mM sucrose, 10 mM glutamate, 0.34 mM methionine, and 10 mM proline).

ORGANISM(S): Sphingobium sp. SYK-6

PROVIDER: GSE71788 | GEO | 2015/08/07

SECONDARY ACCESSION(S): PRJNA292088

REPOSITORIES: GEO

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Sphingobium sp. SYK-6 treated with several carbon sources I

2015-08-07 | GSE71787 | GEO

Sphingobium sp. SYK-6 treated with several carbon sources I

Project description:Transcriptional profile of RNA extracted from Sphingobium sp. SYK-6 treated with 10 mM dehydrodiconiferyl alcohol (DCA), 10 mM vanillate, or SEMP (10 mM sucrose, 10 mM glutamate, 0.34 mM methionine, and 10 mM proline) comparing labeled SYK-6 genomic DNA. Dual channel experiment, RNA from cells treated with DCA, vanillate, or SEMP vs. genomic DNA. 3 control of genomic DNA, independently grown and harvested.

2015-08-07 | E-GEOD-71787 | biostudies-arrayexpress

Sphingobium sp. SYK-6 treated with several carbon sources II

Project description:Transcriptional profile of RNA extracted from Sphingobium sp. SYK-6 treated with 10 mM dehydrodiconiferyl alcohol (DCA), 10 mM vanillate, or SEMP (10 mM sucrose, 10 mM glutamate, 0.34 mM methionine, and 10 mM proline). Dual channel experiment, RNA from cells treated with DCA or vanillate vs SEMP, independently grown and harvested.

2015-08-07 | E-GEOD-71788 | biostudies-arrayexpress

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Project description:Transcriptional profile of RNA extracted from Sphingobium sp. SYK-6 treated with 10 mM pinoresinol (PR), 10 mM acetovanillone (AV), 10 mM phenylcoumarane (PC), 10 mM vanillate (VA), 10 mM vanillin (VN), 10 mM protocatechuate (PCA), 10 mM fellulate (FA), 10 mM 5,5'- dehydrodivanillate (DDVA), 10 mM 1,2‐bis(4‐hydroxy‐3‐methoxyphehyl)‐1,3‐propanediol (B1), 10 mM syringate (SA), 10 mM guaiacylglycerol‐β‐guaiacyl ether (GGE) comparing RNA extracted from SYK-6 treated with SEMP (10 mM sucrose, 10 mM glutamate, 0.34 mM methionine, and 10 mM proline).

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Project description:Sphingobium sp. SYK-6 genome sequencing

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Sphingobium sp. SYK-6 treated with several carbon sources

Project description:Sphingobium sp. SYK-6 treated with several carbon sources

| PRJNA292086 | ENA

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Project description:Sphingobium sp. SYK-6 treated with several carbon sources II

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Project description:Sphingobium sp. SYK-6 treated with several carbon sources I

| PRJNA292087 | ENA

Sphingobium sp. SYK-6 treated with several carbon sources versus SEMP

Project description:Sphingobium sp. SYK-6 treated with several carbon sources versus SEMP

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Sphingobium Nickel resistance analysis by RNA-seq approach

Project description:Nickel is an essential component of many eukaryotic and prokaryotic metallo-enzymes. Due to its employment in many industrial applications, wastewaters from industrial plants often contain millimolar concentrations of Ni2+ that are toxic and life-threatening for many organism. Several lines of preliminary evidence suggest that members of the genus Sphingobium are able to grow in the presence of high concentrations of metal ions. We have isolated a novel Sphingobium strain (sp. ba1) able to grow in the presence of high concentrations (up to 20 mM) of NiCl2. Sequencing of its genome allowed the identification of several genes coding for proteins potentially involved in efflux-mediated resistance mechanisms. Here we use the RNA-seq approach to analyze the response of the Sphingobium sp. ba1 strain to high concentrations (10 mM) of Ni ions. Transcriptomic data show the differential expression of about one-hundred and twenty genes, most of which are up-regulated and encode proteins such as membrane proteins and components of metal efflux systems, enzymes involved in oxidative stress responses (catalases, peroxidases) and signal transduction systems.

2017-07-03 | E-MTAB-5828 | biostudies-arrayexpress

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