Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-SEQ analysis of fission yeast strains mutant for components of SHREC

ABSTRACT: This project aims to identify molecular effects of loss of individual SHREC components on fission yeast transcriptional program RNA-seq was utilized to compare transcript levels between wild type, clr1D, clr2D, clr3D, mit1D and chp2D fission yeast

ORGANISM(S): Schizosaccharomyces pombe

PROVIDER: GSE73359 | GEO | 2016/05/06

SECONDARY ACCESSION(S): PRJNA296791

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Expression profilings of fission yeast strains

Project description:Expression profilings of fission yeast strains

| PRJNA489701 | ENA

Expression profilings of fission yeast strains

Project description:We report gene expression profiling in the fission yeast Schizosaccharomyces pombe. We performed high-throughput sequencing of RNA isolated from wild-type, mmi1(W112A) mutant, erh1∆, and mmi1∆ strains. We find that mmi1(W112A) and erh1∆ derepress a shared subset of mmi1-repressed genes during vegetative growth.

2019-01-03 | GSE119605 | GEO

Expression profiling of wild-type and set3D fission yeast strains

Project description:In fission yeast the SET domain protein, Set3p is required for the reliable execution of cytokinesis. To address whether the deletion of the set3 gene might selectively alter expression of cytokinesis genes, expression profiling of wildtype and set3D strains was performed.

2012-01-01 | GSE33228 | GEO

The fission yeast Schizosaccharomyces pombe

Project description:The fission yeast Schizosaccharomyces pombe

| PRJNA413028 | ENA

Expression profiling of rpb1-12XWTCTD and rpb1-12XS2ACTD fission yeast strains.

Project description:In fission yeast, the nuclear-localized Lsk1p-Lsc1p-Lsg1p cyclin dependent kinase complex is required for the reliable execution of cytokinesis and is also required for Ser-2 phosphorylation RNA pol II carboxy terminal domain. To address whether alterations in CTD phosphorylation might selectively alter expression of cytokinesis genes, expression profiling of site-directed CTD mutants was performed.

2011-09-01 | GSE31369 | GEO

Expression profiling of fission yeast strains: wild-type, erh1∆, and ccr4∆

Project description:We report gene expression profiling in the fission yeast Schizosaccharomyces pombe. We performed high-throughput sequencing of RNA isolated from wild-type, erh1∆, and ccr4∆ strains. We find that many meiotic gene containing degradation sequence DSR are expressed in vegetative erh1∆, while these meiotic mRNAs do not increase in ccr4∆, indicating that Erh1 and Ccr4 target different set of genes during vegetative growth.

2016-06-15 | GSE76112 | GEO

Expression profilings of fission yeast strains (NETSEQ data set)

Project description:Expression profilings of fission yeast strains (NETSEQ data set)

| PRJNA433965 | ENA

Genomewide analysis of nucleosome density histone acetylation and HDAC function in fission yeast

Project description:Genome wide roles for fission yeast HDACs Keywords: Genome wide roles for fission yeast HDACs

2005-08-11 | GSE2879 | GEO

Fission yeast cells: control vs alkaline stress

Project description:Transcriptional profiling of fission yeast cells comparing control untreated cells with cells treated with alkaline stress

2018-12-12 | GSE123626 | GEO

CLMS analysis of fission yeast condensin-DNA samples

Project description:Crosslinking-MS analysis of sulfo-SDA crosslinked fission yeast condensin-DNA samples in the initial binding state (absence of nucleotide) and in the DNA gripping state (in the presence of ADP•BeF3)

2023-09-08 | PXD041027 | JPOST Repository

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data