Genomics

Dataset Information

41

Total RNA sequencing of ovary tissues at 49 days post coitus in Large White and Meishan pigs.


ABSTRACT: We collected the ovary samples at 49 days post coitus in Large White and Meishan adult female pigs, identified the differentially expressed protein coding genes and long non-coding RNAs between these two breeds. three individuals of each breed were harvested as biological replicates. Overall design: Identification of differentially expressed protein-coding genes and long non-coding RNAs in ovary at 49 days post coitus between Large White and Meishan pigs.

INSTRUMENT(S): Illumina HiSeq 2500 (Sus scrofa)

SUBMITTER: Zhonglin Tang  

PROVIDER: GSE73593 | GEO | 2017-06-12

SECONDARY ACCESSION(S): PRJNA297376

REPOSITORIES: GEO

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Publications

Comprehensive analysis of long non-coding RNAs highlights their spatio-temporal expression patterns and evolutional conservation in Sus scrofa.

Tang Zhonglin Z   Wu Yang Y   Yang Yalan Y   Yang Yu-Cheng T YT   Wang Zishuai Z   Yuan Jiapei J   Yang Yang Y   Hua Chaoju C   Fan Xinhao X   Niu Guanglin G   Zhang Yubo Y   Lu Zhi John ZJ   Li Kui K  

Scientific reports 20170224


Despite modest sequence conservation and rapid evolution, long non-coding RNAs (lncRNAs) appear to be conserved in expression pattern and function. However, analysis of lncRNAs across tissues and developmental stages remains largely uncharacterized in mammals. Here, we systematically investigated the lncRNAs of the Guizhou miniature pig (Sus scrofa), which was widely used as biomedical model. We performed RNA sequencing across 9 organs and 3 developmental skeletal muscle, and developed a filteri  ...[more]

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