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Analysis of Fusarium verticillioides gene expression in response to 2-benzoxazolinone (BOA)

ABSTRACT: Investigation of whole genome gene expression level changes in F. verticillioides FRC M-3125 when exposed to 50 ug/ml 2-benzoxazolinone (BOA). Cultures were harvested two hours after exposure. Assessed in reference to control cultures of M-3125 exposed to ethanol (1% final concentration) since BOA was dissolved in ethanol.

ORGANISM(S): Fusarium verticillioides

PROVIDER: GSE74832 | GEO | 2016/10/24

SECONDARY ACCESSION(S): PRJNA301620

REPOSITORIES: GEO

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Analysis of Fusarium verticillioides gene expression in response to 2-benzoxazolinone (BOA)

Project description:Investigation of whole genome gene expression level changes in F. verticillioides FRC M-3125 when exposed to 50 ug/ml 2-benzoxazolinone (BOA). Cultures were harvested two hours after exposure. Assessed in reference to control cultures of M-3125 exposed to ethanol (1% final concentration) since BOA was dissolved in ethanol. A four chip study using total RNA recovered from two separate control cultures of F. verticillioides FRC M-3125 in PDB containing 1% ethanol and two separate experimental cultures of M-3125 grown in PDB plus the added treatment of 50 ug/ml ethanolic BOA. The cultures were incubated for two hours on a rotary shaker (200 rpm) at 27C in the dark and then harvested by vacuum filtration and frozen in liquid nitrogen. The chips were a F. verticillioides custom 14K array based on platform GPL14669.

2016-10-24 | E-GEOD-74832 | biostudies-arrayexpress

Analysis of Fusarium verticillioides gene expression in response to lactam and lactone compounds

Project description:Investigation of whole transcriptional changes in F. verticillioides FRC M-3125 when exposed to 5 μg/ml pyrrocidine A (PA), 20 μg/ml pyrrocidine B (PB), 50 μg/ml 2-benzoxazolinone (BOA), 50 μg/ml 2-oxindole (OXD), 50 μg/ml 2-coumaranone (CMN), or 50 μg/ml chlorzoxazone (CZX). Cultures were harvested one hour after exposure. Assessed in reference to control cultures of M-3125 exposed to DMSO (0.5% final concentration) since all the above compounds were dissolved in DMSO.

2019-06-25 | GSE116351 | GEO

Analysis of Fusarium verticillioides gene expression in response to nitric oxide (NO)

Project description:Investigation of whole transcriptional changes in F. verticillioides wild-type (WT) strain FRC M-3125 and gene deletion strain ΔFVEG_10494-6.4 when treated with and without 1.5 mM diethylenetriamine (DETA) NONOate for 30 min, with three biological replicates each. DETA NONOate is a NO-donor molecule.

2019-09-01 | GSE118800 | GEO

Fusarium verticillioides

Project description:F. verticillioides cultures on dissected maize tissues

| PRJNA101671 | ENA

Transcriptomic response of Fusarium verticillioides to Bacillus mojavensis lipopeptides

Project description:Transcriptomic data collected from cultures of Fusarium verticillioides six hours post-exposure to Bacillus mojavensis RRC101 lipopeptides (surfactins, fengycins, combined treatment)

2020-09-30 | GSE120054 | GEO

Expression analysis of wild type Fusarium verticillioides cultured in liquid media

Project description:Investigation of whole genome gene expression level changes over time of Fusarium verticillioides wild-type in liquid fumonisin inducing media (GYAM). Fusarium verticillioides produces a polyketide derived mycotoxin, fumonsin, over time in liquid media (Proctor et al, Co-expression of 15 contiguous genes delineates a fumonisin biosynthetic gene cluster in Gibberella moniliformis, Fungal Genetics and Biology, 38:237-249). A twelve chip study using total RNA recovered from twelve wild type cultures of Fusarium verticillioides. Each chip measures the expression level of 13,288 genes with thirteen 60-mer probe pairs per gene.

2010-05-16 | E-GEOD-16900 | biostudies-arrayexpress

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Project description:Fusarium verticillioides Genome sequencing

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Fusarium verticillioides

Project description:Fusarium verticillioides Genome sequencing

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Fusarium verticillioides

Project description:Fusarium verticillioides Raw sequence reads

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Genome wide expression analysis of genes regulated by SGE1 in Fusarium verticillioides

Project description:Investigation of whole genome expression changes induced by SGE1 30 minutes after induction of SGE1 expression in an SGE1 mutant strain of Fusarium verticillioides. Comparison between wild-type, SGE1 overexpression mutant GMTcp-272 (xlnp:SGE1 in SGE1 mutant background) and sge1 mutant in liquid medium (18 hrs) after induction with xylose. SGE1 plays a role in pathogenicity and synthesis of secondary metabolism. In this study, total RNA recovered from nine cultures of F. verticillioides (wild-type, sge1 mutant and SGE1 overexpression mutant GMTcp-272, in triplicate) 30 minutes after the addition of xylose was used to identify genes regulated by SGE1.

2014-04-09 | E-GEOD-56664 | biostudies-arrayexpress

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