Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Genome-wide map of DNA methylation to unravel the function of EBF1 C-terminus domain

ABSTRACT: To study the function of the C-terminus domain, DNA methylation status was profiled in Empty, Ebf1wt and Ebf1DC transduced Ebf1-/- progenitor cells.

ORGANISM(S): Mus musculus

PROVIDER: GSE81116 | GEO | 2016/05/09

SECONDARY ACCESSION(S): PRJNA320628

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Genome-wide DHS study to unravel the function of EBF1 C-terminus domain

Project description:To study the function of the C-terminus domain, DnaseI hypersensitivity assay was performed by transducing Empty, Ebf1wt and Ebf1ΔC expressing vectors into Ebf1-/- progenitor cells.

2016-05-09 | GSE79141 | GEO

Microarray analysis to unravel the function of C-terminus domain of EBF1 by gain-of function approach

Project description:To study the function of C-terminus domain of EBF1, a gain-of function microarray analysis was performed by transducing Empty, Ebf1wt and Ebf1DC expressing vectors into Ebf1-/- progenitor cells.

2016-05-09 | GSE78842 | GEO

Microarray analysis to unravel the function of C-terminus domain of EBF1 by replacement approach

Project description:To unravel the function of C-terminus domain of EBF1, a replacement microarray analysis was performed by transducing Ebf1wt and Ebf1DC expressing vectors intoA-MuLV transformed pro-B (Ebf1fl/fl;RERTCre) cells.

2016-05-09 | GSE78843 | GEO

Genome-wide map of EBF1, H3K4me2 and H3K27me3 marks to unravel the EBF1 C-terminus domain function

Project description:To study the function of C-terminus domain, EBF1, H3K4me2 and H3K27me3 ChIP was performed

2016-05-09 | GSE79142 | GEO

Genome-wide occupancy of EBF1-wt & EBF1-H240A

Project description:To study the function of EBF1-H240 residue, genome-wide EBF1 ChIP was performed in A-MuLV transformed pro-B (Ebf1fl/fl;RERTCre) cells transduced with Ebf1wt and Ebf1H240A expressing vectors.

2016-11-21 | GSE87636 | GEO

EBF1 ChIP-seq after NICD1 induction

Project description:Quantitative EBF1 ChIP-seq analysis in EBF1wt- or EBF1E271A-expressing pro-B cells harboring doxycycline-inducible NICD1 expression after doxycycline treatment.

2022-07-01 | GSE201527 | GEO

Gene expression profile of EBF1-wt & EBF1-H240A

Project description:To study the function of EBF1-H240 residue, a gain-of function microarray analysis was performed by transducing Empty, Ebf1-wt and Ebf1-H240A expressing vectors into Ebf1-/- progenitor cells.

2016-11-21 | GSE87634 | GEO

Transcription profiling of NIH3T3 cells over-expressing PPARg or EBF1 to study the efficiency and kinetics of cell adipogenesis induced by PPARg and EBF1.

Project description:NIH-3T3 cells transduced with either EBF1-, PPARg2- or empty vector were stimulated with hormones to initiate adipocyte differentiation. RNA extraction was done using TriZol at d0, d2, d4 and d10 after stimulation. Samples were handled according to standard affymetrix protocols. Keywords = Adipogenesis, early B-cell factor 1 (EBF1), commitment, differentiation, NIH-3T3, pparg

2007-09-22 | E-GEOD-2192 | biostudies-arrayexpress

Differentiation of NIH-3T3 cells to adipocytes by PPARg or EBF1 over-expression.

Project description:NIH-3T3 cells transduced with either EBF1-, PPARg2- or empty vector were stimulated with hormones to initiate adipocyte differentiation. RNA extraction was done using TriZol at d0, d2, d4 and d10 after stimulation. Samples were handled according to standard affymetrix protocols. Keywords = Adipogenesis Keywords = adipocyte Keywords = early B-cell factor 1 (EBF1) Keywords = commitment Keywords = differentiation Keywords = NIH-3T3 Keywords = pparg Keywords: time-course

2005-01-28 | GSE2192 | GEO

Gene expression analysis after reconstitution of Ebf1-deficient pre-pro-B cells with Ebf1

Project description:Ebf1 deficient pre-pro B-cells (Fraction A) can be cultured in the presence of stromal feeders and cytokines. The retroviral transduction of these cells with Ebf1 was used as gain-of-function experiment for the analysis of direct and functional target genes of Ebf1. Ebf1 deficient pre-pro B-cells were retrovirally transduced with an Ebf1-expressing or control retrovirus. 24h after transduction the infected cells were isolated and their gene expression profile was compared.

2010-07-29 | E-GEOD-21455 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data