Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Gene expression levels dependent on cultivated temperature

ABSTRACT: To evaluate the gene expression levels dependent on cultivated temperature (15-degree only or 25-degree after 15-degree grown) in wild type (N2 strain) and daf-2mutant

ORGANISM(S): Caenorhabditis elegans

PROVIDER: GSE81409 | GEO | 2016/05/31

SECONDARY ACCESSION(S): PRJNA321484

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Gene expression levels dependent on cultivated temperature

Project description:To evaluate the gene expression levels dependent on cultivated temperature (15-degree only or 25-degree after 15-degree grown) in wild type (N2 strain) and daf-2mutant Worms were cultivated at 15-degree from egg to adult or at 25-degree for 12 hours after 15-degree grown until young adult, then total RNA was collected

2016-05-31 | E-GEOD-81409 | biostudies-arrayexpress

TJ1081)fer-15(b26)II; daf-16(m26)I) vs. BA713(fer-15(b26)II)

Project description:To identify changes in gene expression in daf-16 mutants, we compared expression in fer-15 young adults to expression in fer-15(b26); daf-16(m26) young adults grown at 25?C. At Stanford University, four samples of fer-15 and five samples of fer-15; daf-16 animals were prepared. At the University of Colorado, seven samples of fer-15 and six samples of fer-15; daf-16 was prepared. Set of arrays that are part of repeated experiments Place of growth: At Stanford vs Colorado Genotype: mutant strains vs wt (N2) mixed stage; some expts are reverse dye (wt in channel 2)

2008-07-29 | GSE12167 | GEO

TJ1081)fer-15(b26)II; daf-16(m26)I) vs. BA713(fer-15(b26)II)

2008-07-29 | E-GEOD-12167 | biostudies-arrayexpress

Vibrio cholerae temperature shift microarray analysis

Project description:Temperature is a crucial environmental signal that govers the occurrence of Vibrio cholerae and cholera outbreaks. To understand how temperature impacts the transcriptome of V. cholerae we performed whole-genome level transcriptional profiling using custom microarrays on cells grown at human body temperature (37 C) then shifted to temperatures V. cholerae experience in the environment (15 C and 25 C).

2016-05-09 | GSE81158 | GEO

Response to temperature increase is genotype-dependent: A genomic analysis of marine larvae

Project description:We produced differentially sensitive-temperature phenotypes using genetically defined larval families of the bivalve Crassostrea gigas. Larval growth rates varied ~5-fold and reciprocal hybrids showed different genotype-dependent responses over a 15-25°C temperature range. Whole-genome expression analysis of ~24 million cDNAs from larvae identified 22,250 unique transcripts. Of these, ~15% showed a significant interaction between genotype and temperature and are associated with genotype-dependent differences in response to temperature.

2011-08-01 | GSE13028 | GEO

Identification of high temperature and daylength responsive genes in barley

Project description:High temperature influences plant development and can reduce crop yields. We used the Agilent Barley Gene Expression Microarray to identify high temperature responsive genes in cereals. In temperate cereals, such as wheat and barley, high temperature results in rapid progression through reproductive development in long-days but inhibits early stages of reproductive development in short-days. We examined the transcriptome of barley plants grown at two different temperatures, 15°C or 25°C, in either long or short-days. Under these conditions early reproductive development was accelerated by high temperature in long-days but inhibited by high temperature in short-days. To control for the effect of temperature on vegetative growth, plants were sampled at the same stage of vegetative development (leaf emergence) in all treatments. Transcriptome analysis identified genes that show changed transcript levels in response to daylength (long versus short-days), genes that show changed transcript levels in response to temperature (15°C versus 25°C), and small groups of genes that show changed transcript levels only in response to specific combinations of daylength and temperature. For example, genes that are upregulated only under long-days and high temperature: conditions in which early reproductive development proceeds rapidly. The temperature responsive genes identified here offer potential candidates for developmental regulators controlling the developmental response of cereal crops to high temperatures.

2012-04-04 | GSE33938 | GEO

Gene expression regulated by warm temperature in C. elegans

Project description:Stress resistance induced by mild environmental stress protects animals against aging-associated cellular damages and promotes longevity. Here, we reveal that mild heat triggers innate immune and detoxification responses that confers longevity at warm temperatures. We compared the transcriptome of 25°C-cultivated animals to that of 15°C controls through RNA-seq analysis. A total of 1958 transcripts were differentially regulated, with 1143 up-regulations and 815 down-regulations.

2019-04-18 | GSE115095 | GEO

Comparison between decreasing body temperature and keeping normal temperature before starting heated chemotherapy into abdomen on developing decreased body temperature after heated chemotherapy

Project description:Intervention1: Normothermia Group: Normothermia will be maintained throughout CRS and warming devices will not be stopped before starting HIPEC. Control Intervention1: Passive Hypothermia Before HIPEC: As per our standard anesthesia protocol, warming devices will be stopped 1 hour before the HIPEC phase to maintain temperature between 34.5-35.0 degree C. Primary outcome(s): Proportion of patients who have achieved normal body temperature of at least 35 degree C post HIPECTimepoint: Immediately (0 hour) after shifting the patients to ICU or postanaesthesia care unit. Study Design: Randomized, Parallel Group Trial Method of generating randomization sequence:Computer generated randomization Method of allocation concealment:On-site computer system Blinding and masking:Open Label

| 78212 | ecrin-mdr-crc

N2, daf-1(m40), and daf-1(m40);daf-3(mgDf90) adult, gravid hermaphrodites

Project description:total RNA from N2, daf-1(m40), and daf-1(m40);daf-3(mgDf90) adult, gravid hermaphrodites were extracted and sequenced.

2020-05-28 | GSE131997 | GEO

Rice whole transcriptome differences at two temperature levels surveyed by RNA-Seq

Project description:We report that TOG1 coordinates global changes of gene expression upon high temperature to support rice thermotolerant growth. We performed gene ontology (GO) enrichment analysis of the differentially expressed genes in rice seedlings grown at 25 ℃ and 30 ℃ and found that when temperature increases, wild-type dramatically adjusts the expression level of hundreds of genes in GO terms polysaccharide metabolic process, carbohydrate metabolic process, glucan metabolic process, carbon fixation, response to stimulus and organic substance metabolic process required for growth. However, in a tog1 mutant, the differentially expressed genes in response to the temperature increase significantly enriched in GO terms response to stimulus, response to oxidative stress and response to stress, whereas the coordination of primary metabolic processes and carbon fixation were largely impaired or undetectable.

2012-11-07 | GSE42096 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data