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Extraneous Genes of Mentally Retarded Subject in Terms of Microarray a gene expression profiling technology

ABSTRACT: Searching for new genes involved in Mental Retardation. This research has also leaded to the identification of set of extraeneous up and down regulated genes of mentally retarded male and female subjects by comparing with normal reference.

ORGANISM(S): Homo sapiens

PROVIDER: GSE84701 | GEO | 2016/07/22

SECONDARY ACCESSION(S): PRJNA330857

REPOSITORIES: GEO

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Extraneous Genes of Mentally Retarded Subject in Terms of Microarray a gene expression profiling technology

Project description:Searching for new genes involved in Mental Retardation. This research has also leaded to the identification of set of extraeneous up and down regulated genes of mentally retarded male and female subjects by comparing with normal reference. Total RNA was extracted using NucleoSpinÂ® RNA Blood Midi kit, Total RNA was amplified and purified using the Ambion Illumina RNA amplification kit, 750 ng of labeled cRNA samples were hybridized to each Human HT12 expression v.4 bead array for 16-18 h at 58Â°C, Arrays were scanned with an Illumina bead array Reader confocal scanner, All data analysis and visualization of differentially expressed genes was conducted using R 2.15.0.

2016-07-22 | E-GEOD-84701 | biostudies-arrayexpress

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Genotyping data from one patient with unexplained mental retardation and a deletion in 11q13.3-q13.4

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Project description:Profiling the genomic profiles of mental retardation patients. 13 mental retardation patients were selected for detection of genomic aberrations. Patient's DNA were hybridized against Promega control on Agilent G4426B arrays and scanned with the Agilent G2505B scanner.

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Project description:Down syndrome is the most common form of genetic mental retardation. How Trisomy 21 causes mental retardation remains unclear and its effects on adult neurogenesis have not been addressed. To gain insight into the mechanisms causing mental retardation we used microarrays to investigate gene expression differences between Ts1Cje (a mouse model of Down syndrome) and C57BL/6 littermate control neurospheres. The neurospheres were generated from neural stem cells and progenitors isolated from the lateral walls of the lateral ventricles from adult mice.

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rge1-1, retarded growth of embryo mutant vs wild-type Col-0

Project description:The loss-of-function mutation of the RGE1 (retarded growth of embryo) gene, which is expressed during seed development, caused small and shriveled seeds. The embryo of the loss-of-function mutant showed retarded growth after the heart stage although abnormal morphogenesis and pattern formation of the embryo and endosperm was not observed. RGE1 expression was determined in endosperm cells using the β-glucuronidase reporter gene and RT-PCR. The differences of expression profile between rge1-1 and wild type Col-0 was examined to know the functions of RGE1. The result of Microarray analysis showed specific down-regulation of putative GDSL motif lipase genes in the rge1-1 mutant indicating possible involvement of these genes in seed morphology.

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2005-09-16 | GSE3191 | GEO

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