Copy number analysis by low coverage whole genome sequencing using ultra low-input DNA from formalin-fixed paraffin embedded tumour tissue

ABSTRACT: We analysed a cohort of Lifepool IDC cases treated only with wide local excision for genome-wide copy number and loss of heterozygosity using Affymetrix OncoScan® MIP arrays. Cases included IDC (n=4).Benign cases were available for 2 cases. We have analysed copy number calling from the same samples using low-coverage whole genome sequencing in order to investigate the concordance between the two techniques.

ORGANISM(S): Homo sapiens

PROVIDER: GSE85035 | GEO | 2016/08/02

SECONDARY ACCESSION(S): PRJNA336004

REPOSITORIES: GEO