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Streptomyces exploration is triggered by fungal interactions and volatile signals

ABSTRACT: We discovered the bacteria Streptomyces venezuelae can display a new form of growth termed exploration, and we used NGS to compare transcriptome profiles of cells demonstrating exploration versus static cells (not demonstrating exploration)

ORGANISM(S): Streptomyces venezuelae ATCC 10712

PROVIDER: GSE86378 | GEO | 2017/02/14

SECONDARY ACCESSION(S): PRJNA341574

REPOSITORIES: GEO

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Streptomyces exploration is triggered by fungal interactions and volatile signals.

Project description: Not available

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Transcriptional changes over time in exploring cultures of Streptomyces venezuelae [three growth timepoints]

Project description:We isolated and sequenced mRNA from Streptomyces venezuelae grown on solid medium that promotes exploratory behaviour in this bacterial species. The data was analyzed using DeSeq2 to identify genes that undergo changes in expression over time.

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Transcriptional changes over time in exploring cultures of Streptomyces venezuelae

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Project description:ChIP-chip of genomic DNA of Streptomyces venezuelae using polyclonal antibody against bldN

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Project description:ChIP-chip analysis of GlnR-FLAG binding sites in Streptomyces venezuelae under varying conditions of nitrogen availibility

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Determination by ChIP-chip of the binding sites of the developmental transcription regulator BldC in the genome of Streptomyces venezuelae ATCC 10712

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