Transcriptomics

Dataset Information

43

Transcriptome profile of human colorectal adenomas.


ABSTRACT: Background: Colorectal cancers are believed to arise predominantly from adenomas. Although these precancerous lesions have been subjected to extensive clinical, pathological, and molecular analyses, little is currently known about the global gene expression changes accompanying their formation. Results: To characterize the molecular processes underlying the transformation of normal colonic epithelium, we compared the transcriptomes of 32 prospectively collected adenomas with those of normal mucosa from the same individuals. Important differences emerged not only between the expression profiles of normal and adenomatous tissues, but also between those of small and large adenomas. A key feature of the transformation process was the remodeling of the Wnt pathway reflected in patent over- and underexpression of 78 known components of this signaling cascade. Conclusions: Our transcriptomic profiles of normal colonic mucosa and colorectal adenomas shed new light on the early stages of colorectal tumorigenesis. Keywords: tissue comparison Overall design: Pedunculated, sporadic colorectal polyps and corresponding normal mucosa were obtained during colonoscopies. The tissues were collected prospectively with informed patient consent and the approval of the local Human Research Ethics Committee.

REANALYSED by: GSE39923GSE119128

INSTRUMENT(S): [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array

ORGANISM(S): Homo sapiens  

SUBMITTER: Giancarlo Marra  

PROVIDER: GSE8671 | GEO | 2007-08-03

SECONDARY ACCESSION(S): PRJNA101881

REPOSITORIES: GEO

Similar Datasets

2008-06-16 | E-GEOD-8671 | ArrayExpress
| GSE50592 | GEO
2013-08-30 | E-GEOD-50194 | ArrayExpress
2013-08-27 | E-GEOD-50114 | ArrayExpress
2008-06-12 | E-GEOD-2175 | ArrayExpress
2005-05-23 | GSE2175 | GEO
2013-07-09 | E-GEOD-43841 | ArrayExpress
| GSE110221 | GEO
2008-08-27 | GSE12514 | GEO
2014-09-08 | E-GEOD-48684 | ArrayExpress