Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and dek2 mutant Transcriptomes

ABSTRACT: Analysis of gene expression level. The hypothesis tested in the present study was that dek2 mutant influence the expression of mitochondrial function associated genes. Results provide important information of the gene expression level regulation of mitochondrial part and oxidative phosphorylation.

ORGANISM(S): Zea mays subsp. mays

PROVIDER: GSE87067 | GEO | 2016/10/01

SECONDARY ACCESSION(S): PRJNA343423

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and dek35 mutant Transcriptomes

Project description:Analysis of gene expression level. The hypothesis tested in the present study was that dek35 mutant influence the expression of mitochondrial oxidative phosphorylation associated genes. Results provide important information of the gene expression level regulation of mitochondrial complexes assembly proteins, translational elongation factors and genes associated with other biological processes. Endosperm mRNA profiles of 18DAP wild type (WT) and dek35 mutant were generated by deep sequencing, in triplicate, using Illumina Hiseq 2500 (Zea mays).

2016-03-25 | E-GEOD-79583 | biostudies-arrayexpress

Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and dek35 mutant Transcriptomes

2016-03-25 | GSE79583 | GEO

Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and dek44 mutant Transcriptomes

Project description:Analysis of gene expression level. The hypothesis tested in the present study was that dek44 mutant influence the expression of mitochondrial ETC associated genes. Results provide important information of the gene expression level regulation of mitochondrial envelop, proton transport,translation and genes associated with other biological processes.

2019-02-23 | GSE126949 | GEO

Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and dek10 mutant Transcriptomes

Project description:Analysis of gene expression level. The hypothesis tested in the present study was that dek10 mutant influences the expression of mitochondrial ETC associated genes. Results provide important information of the gene expression level regulation of mitochondrial envelop, proton transport,translation and genes associated with other biological processes.

2016-05-01 | GSE80091 | GEO

Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type (WT) and dek37 mutant Transcriptomes

Project description:Analysis of gene expression level. The hypothesis tested in the present study was that dek37 mutant affects cis-splicing of maize mitochondrial nad2 intron 1 . Results provide important information of the gene expression level regulation of mitochondrial pathway associated genes.

2017-03-15 | GSE95769 | GEO

Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type (WT) and dek41 Transcriptomes

Project description:Analysis of gene expression level. The hypothesis tested in the present study was that dek41 mutation affects cis-splicing of nad4 intron 3 in mitochondria in mutant kernels. Results provide important information of the gene expression level of mitochondrial membrane and metabolic process pathway associated genes.

2019-04-30 | GSE117091 | GEO

Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and opaque2 mutant Transcriptomes

Project description:Analysis of gene expression level. The hypothesis tested in the present study was that opaque2 mutant influence the expression of storage proteins. Results provide important information of the gene expression level regulation of storage proteins and other biological processes. Endosperm mRNA profiles of 15DAP wild type (WT) and opaque2 mutant were generated by deep sequencing, in triplicate, using Illumina Hiseq 2500 (Zea mays).

2014-10-15 | E-GEOD-61830 | biostudies-arrayexpress

Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and fl4 mutant Transcriptomes

Project description:Analysis of gene expression level. The hypothesis tested in the present study was that fl4 mutant influence the ER stress pathway. Results provide important information of the gene expression level regulation of different ER stress pathways and apoptosis Endosperm mRNA profiles of 19DAP wild type (WT) and fl4 mutant were generated by deep sequencing, in triplicate, using Illumina Hiseq 2000 (Zea mays).

2014-01-18 | E-GEOD-54184 | biostudies-arrayexpress

Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and pro1 mutant Transcriptomes

Project description:Analysis of gene expression level. The hypothesis tested in the present study was that pro1 mutant influence the cell cycle pathway. Results provide important information of the cell cycle-related gene expression level regulation of cell cycle transition from G1 to S phase. Seedling mRNA profiles of 14DAG wild type (WT) and pro1 mutant were generated by deep sequencing, in triplicate, using Illumina Hiseq 2000 (Zea mays).

2015-03-31 | E-GEOD-56004 | biostudies-arrayexpress

Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and rea1 mutant Transcriptomes

Project description:Analysis of gene expression level. The hypothesis tested in the present study was that rea1 mutant influence the expression of translation and nucleosome assembly associated genes. Results provide important information of the gene expression level regulation of ribosome proteins, elongation factors, histones and genes associated with other biological processes. Endosperm mRNA profiles of 15DAP wild type (WT) and rea1 mutant were generated by deep sequencing, in triplicate, using Illumina Hiseq 2500 (Zea mays).

2015-04-25 | E-GEOD-67080 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data