RNA validation of LAB 2k v2

ABSTRACT: To study their metabolic potential in natural ecosystems, we developed a species-independent LAB microarray, containing 2,269 30-mer oligonucleotides, and targeting 406 genes that play a key role in the production of sugar catabolites, bacteriocins, exopolysaccharides, and aromas, in probiotic and biosafety characteristics, and in stress response. Also, genes linked to negative traits such as antibiotic resistance and virulence are represented. This experiment is a validation experiment, where we hybridized labelled RNA from 20 LAB strains, covering 86% of all oligos. Keywords: Platform validation experiment

ORGANISM(S): Lacticaseibacillus casei Companilactobacillus farciminis Limosilactobacillus panis Weissella confusa Lactobacillus helveticus Latilactobacillus curvatus Enterococcus mundtii Lactococcus lactis Lentilactobacillus hilgardii Lentilactobacillus buchneri Streptococcus thermophilus Leuconostoc mesenteroides Lactobacillus gasseri Brevibacterium linens Pediococcus pentosaceus Limosilactobacillus pontis Lactobacillus crispatus Lactobacillus acidophilus Fructilactobacillus sanfranciscensis Latilactobacillus sakei Companilactobacillus alimentarius Lactiplantibacillus pentosus Lactobacillus delbrueckii Enterococcus faecium Bifidobacterium Lacticaseibacillus paracasei Oenococcus oeni Lentilactobacillus parabuchneri Fructilactobacillus fructivorans Companilactobacillus mindensis Companilactobacillus paralimentarius Lactiplantibacillus plantarum Lacticaseibacillus rhamnosus Furfurilactobacillus rossiae Limosilactobacillus fermentum Leuconostoc pseudomesenteroides Enterococcus faecalis Mammaliicoccus lentus Enterococcus casseliflavus Leuconostoc citreum Lactiplantibacillus paraplantarum Lactobacillus johnsonii Pediococcus acidilactici Lactobacillus amylovorus Staphylococcus aureus Enterococcus hirae Limosilactobacillus reuteri Levilactobacillus brevis Limosilactobacillus frumenti

PROVIDER: GSE9140 | GEO | 2009/10/20

SECONDARY ACCESSION(S): PRJNA102683

REPOSITORIES: GEO