Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA seq analysis of adipocyte precursor cells (APC) from Per3 KO mice

ABSTRACT: Understanding the differences in the transcriptome of adipocyte precuror cells in Per3 KO mice compared with wild type mice

ORGANISM(S): Mus musculus

PROVIDER: GSE92762 | GEO | 2017/11/10

SECONDARY ACCESSION(S): PRJNA358635

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

A topological cluster of differentially regulated genes in mice lacking PER3

Project description:Polymorphisms in human circadian clock gene PERIOD3 (PER3) are associated with a wide variety of phenotypes such as diurnal preference, delayed sleep phase disorder, sleep homeostasis, cognitive performance, bipolar disorder, type 2 diabetes, cardiac regulation, cancer, light sensitivity, hormone and cytokine secretion, and addiction. However, the molecular mechanisms underlying these phenotypic associations remain unknown. Per3 knockout mice (Per3-/-) have phenotypes related to activity, sleep homeostasis, anhedonia, metabolism, and behavioural responses to light. Using a protocol that induces behavioural differences in response to light in wild type and Per3-/- mice, we compared genome-wide expression in the eye and hypothalamus in the two genotypes. Differentially expressed transcripts were related to inflammation, taste, olfactory and melatonin receptors, lipid metabolism, cell cycle, ubiquitination, and hormones, as well as receptors and channels related to sleep regulation. Differentially expressed transcripts in both tissues co-localised with Per3 on an ~8Mbp region of distal chromosome 4. The most down-regulated transcript is Prdm16, which is involved in adipocyte differentiation and may mediate altered body mass accumulation in Per3-/- mice. eQTL analysis with BXD mouse strains showed that the expression of some of these transcripts and also others co-localised at distal chromosome 4, is correlated with brain tissue expression levels of Per3 with a highly significant linkage to genetic variation in that region. These data identify a cluster of transcripts on mouse distal chromosome 4 that are co-regulated with Per3 and whose expression levels correlate with those of Per3. This locus lies within a topologically associating domain island that contains many genes with functional links to several of the diverse non-circadian phenotypes associated with polymorphisms in human PER3

2020-01-15 | GSE143650 | GEO

Adamts1 Adipocyte Progenitor Cell (APC) expression profile

Project description:Expression profiling comparing primary adipocyte progenitor cells from Adamts1 transgenic mice to wild-type littermates

2016-12-06 | GSE71427 | GEO

Expression profile in WAT from inducible adipocyte specific TFG KO mice

Project description:Expression profile in WAT from inducible adipocyte specific TFG KO mice

| PRJNA602366 | ENA

Quantitative Analysis of Wild Type and Prmt1 adipocyte-specific KO Epididymal primary adipocyte Transcriptomes

Project description:We attempted to analyze the effect of adipocyte-specific knockout of Prmt1 in energy homeostasis in mice. By analyzing the transcriptomics of epididymal primary adipocytes from male mice with wild type and adipocyte-specific Prmt1 knockout mice, we provide the insight into the collective roles of Prmt1 in epididymal white adipose tissues.

2021-02-25 | GSE167446 | GEO

Mus musculus

Project description:RNA seq analysis of adipocyte precursor cells (APC) from Per3 KO mice

| PRJNA358635 | ENA

Quantitative Analysis of Wild Type and Crtc2 adipocyte-specific KO Epididymal primary adipocyte Transcriptomes

Project description:Quantitative Analysis of Wild Type and Crtc2 adipocyte-specific KO Epididymal primary adipocyte Transcriptomes

| PRJNA855467 | ENA

Quantitative Analysis of Wild Type and Prmt1 adipocyte-specific KO Epididymal primary adipocyte Transcriptomes

Project description:Quantitative Analysis of Wild Type and Prmt1 adipocyte-specific KO Epididymal primary adipocyte Transcriptomes

| PRJNA704660 | ENA

Quantitative Analysis of Wild Type and Crtc2 adipocyte-specific KO Epididymal primary adipocyte Transcriptomes

Project description:We attempted to analyze the effect of adipocyte-specific knockout of Crtc2 in in aging. By analyzing the transcriptomics of epididymal primary adipocytes from male mice with wild type and adipocyte-specific Crtc2 knockout mice in response to aging, we provide the insight into the collective roles of Crtc2 in epididymal white adipose tissues upon aging.

2022-07-09 | GSE207433 | GEO

Effect of 12 hour sleep restriction on the transcriptome of mice carying a human Per3 polymorphism

Project description:In humans, a primate-specific variable-number tandem-repeat (VNTR) polymorphism (4 or 5 repeats 54 nt in length) in the circadian gene PER3 is associated with differences in sleep timing and homeostatic responses to sleep loss. We investigated the effects of this polymorphism on circadian rhythmicity and sleep homeostasis by introducing the polymorphism into mice and assessing circadian and sleep parameters at baseline and during and after 12 h of sleep deprivation (SD). Microarray analysis was used to measure hypothalamic and cortical gene expression. Circadian behavior and sleep were normal at baseline. The response to SD of 2 electrophysiological markers of sleep homeostasis, electroencephalography (EEG) M-NM-8 power during wakefulness and M-NM-4 power during sleep, were greater in the Per35/5 mice. During recovery, the Per35/5 mice fully compensated for the SD-induced deficit in M-NM-4 power, but the Per34/4 and wild-type mice did not. Sleep homeostasis-related transcripts (e.g., Homer1, Ptgs2, and Kcna2) were differentially expressed between the humanized mice, but circadian clock genes were not. These data are in accordance with the hypothesis derived from human data that the PER3 VNTR polymorphism modifies the sleep homeostatic response without significantly influencing circadian parameters.-Hasan, S., van der Veen, D. R., Winsky-Sommerer, R., Hogben, A., Laing, E. E., Koentgen, F., Dijk, D.-J., Archer, S. N. A human sleep homeostasis phenotype in mice expressing a primate-specific PER3 variable-number tandem-repeat coding-region polymorphism. Mice recievied 12 hours of sleep restriction during the 12 hours of light in the light-dark cycle Boxhill represents Per35/5 mice and Coach represents Per34/4 mice. A total of 48 samples comprising 24 mice

2014-03-11 | E-GEOD-55494 | biostudies-arrayexpress

Effect of ultradian light-dark cycles on the transcriptome of mice carying a human Per3 polymorphism

Project description:In humans, a primate-specific variable-number tandem-repeat (VNTR) polymorphism (4 or 5 repeats 54 nt in length) in the circadian gene PER3 is associated with differences in sleep timing and homeostatic responses to sleep loss. We investigated the effects of this polymorphism on circadian rhythmicity and sleep homeostasis by introducing the polymorphism into mice and assessing circadian and sleep parameters at baseline and during and after 12 h of sleep deprivation (SD). Microarray analysis was used to measure hypothalamic and cortical gene expression. Circadian behavior and sleep were normal at baseline. The response to SD of 2 electrophysiological markers of sleep homeostasis, electroencephalography (EEG) M-NM-8 power during wakefulness and M-NM-4 power during sleep, were greater in the Per35/5 mice. During recovery, the Per35/5 mice fully compensated for the SD-induced deficit in M-NM-4 power, but the Per34/4 and wild-type mice did not. Sleep homeostasis-related transcripts (e.g., Homer1, Ptgs2, and Kcna2) were differentially expressed between the humanized mice, but circadian clock genes were not. These data are in accordance with the hypothesis derived from human data that the PER3 VNTR polymorphism modifies the sleep homeostatic response without significantly influencing circadian parameters.-Hasan, S., van der Veen, D. R., Winsky-Sommerer, R., Hogben, A., Laing, E. E., Koentgen, F., Dijk, D.-J., Archer, S. N. A human sleep homeostasis phenotype in mice expressing a primate-specific PER3 variable-number tandem-repeat coding-region polymorphism. Mice were kept under 3.5h light- 3.5 hours dark cycles and samples were collected in the 17th light cycle Boxhill represents Per35/5 mice and Coach represents Per34/4 mice. A total of 30 samples comprizing 30 mice

2014-03-11 | E-GEOD-55495 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data