Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Diverse Non-Genetic Allele Specific Expression Effects Shape Genetic Architecture at the Cellular Level in the Mammalian Brain

ABSTRACT: This SuperSeries is composed of the SubSeries listed below.

ORGANISM(S): Mus musculus Macaca fascicularis

PROVIDER: GSE93788 | GEO | 2017/02/28

SECONDARY ACCESSION(S): PRJNA362348

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Diverse Non-genetic, Allele-Specific Expression Effects Shape Genetic Architecture at the Cellular Level in the Mammalian Brain.

Project description: Not available

| S-EPMC5774018 | biostudies-literature

Diverse Non-Genetic Allele Specific Expression Effects Shape Genetic Architecture at the Cellular Level in the Mammalian Brain [HybridMouseDRN]

Project description:Determine allele level expression in hybrid mice of different ages

2017-02-28 | GSE93787 | GEO

Diverse Non-Genetic Allele Specific Expression Effects Shape Genetic Architecture at the Cellular Level in the Mammalian Brain [Primate Daughters]

Project description:Align offspring RNASeq reads to unbiased transcriptomes made incorporating parent genotype information

2017-02-28 | GSE93786 | GEO

Diverse Non-Genetic Allele Specific Expression Effects Shape Genetic Architecture at the Cellular Level in the Mammalian Brain [Primate Parents]

Project description:Genotype parent macaques. This allows us to distinguish maternal and paternal expression in the transicriptomes from the offspring. This also allows us to create a transcriptome index for each daughter that reflects the possible heterozygous SNPs wiith IUPAC codes. This then allows for an alignment that is not biased towords the maternally or paternally expressed reads.

2017-02-28 | GSE93785 | GEO

Diverse Non-Genetic Allele Specific Expression Effects Shape Genetic Architecture at the Cellular Level in the Mammalian Brain

Project description:Diverse Non-Genetic Allele Specific Expression Effects Shape Genetic Architecture at the Cellular Level in the Mammalian Brain

| PRJNA362348 | ENA

Epigenetic and Cellular Diversity in the Brain through Allele-Specific Effects.

Project description: Not available

| S-EPMC6894173 | biostudies-literature

Behavioural syndromes shape evolutionary trajectories via conserved genetic architecture.

Project description: Not available

| S-EPMC7287377 | biostudies-literature

Genetic architecture of gene expression traits across diverse populations.

Project description: Not available

| S-EPMC6105030 | biostudies-literature

Genetic architecture of transcript-level variation in humans.

Project description: Not available

| S-EPMC2651622 | biostudies-literature

Cellular Architecture of Human Brain Metastases

Project description:Here we present an integrative analysis of 15 human parenchymal BrMs as a resource, generated by single-cell transcriptomics, and complemented with two mouse models- and in silico- approaches. We interrogated the composition of BrM niches, molecularly defined the blood-tumor interface, and reveal stromal immunosuppressive states, enriched with infiltrated T cells and macrophages. Specific single-cell interrogation of metastatic tumor cells provides a novel framework of 8 functional cell programs that coexist or anticorrelate. Collectively, these programs delineate two functional BrM archetypes, one proliferative and the other inflammatory, that are evidently shaped through tumor-immune interactions. Our resource provides a foundation to understand the molecular basis of BrM in patients with tumor cell-intrinsic and host environmental- traits.

2021-11-12 | GSE186344 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data