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RNA-seq analysis of gene expression in adult head of Canton-S and Bully lines

ABSTRACT: Goal: Identify genes that are differentially expressed in hyper-aggressive Bully line. We used wildtype Canton-S flies as control. We also explored the effect of developmental temperature on gene expression.

ORGANISM(S): Drosophila melanogaster

PROVIDER: GSE94293 | GEO | 2017/03/01

SECONDARY ACCESSION(S): PRJNA369252

REPOSITORIES: GEO

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Expression data from Canton-S and D18 adult flies

Project description:Even after decades of living in the same laboratory environment two Drosophila melanogaster strains originating from North America (Canton-S) and Central Russia (D18) demonstrate a few differentially expressed genes some of which may be important for local adaptation (e.g. genes responsible for insecticide resistance). Genes with different level of expression between Canton-S and D18 strains belong to important metabolic pathways, for instance energy metabolism, carbohydrate metabolic process, locomotion, body temperature rhythm regulation and tracheal network architecture. We used microarrays to make transcriptome profiling of two laboratory strains of different geographical origin after long-term laboratory maintenance

2020-04-10 | GSE146725 | GEO

Expression data from Canton-S and D18 adult flies

Project description:Expression data from Canton-S and D18 adult flies

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Dm Canton-S Adult Female Head Aged smallRNA RNA-Seq

Project description:modENCODE_submission_3195 This submission comes from a modENCODE project of Eric Lai. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We plan to generate a comprehensive catalog of expressed and functional microRNAs, and generate biological evidence for their regulatory activity. We plan also to delineate the primary transcription units of microRNA genes. Finally, we plan to annotate other classes of non-miRNA expressed small RNAs, as least some of which may define novel classes of small RNA genes. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Keywords: RNA-seq EXPERIMENT TYPE: RNA-seq. BIOLOGICAL SOURCE: Strain: Canton S; Tissue: Female heads; Developmental Stage: Adult Female; Genotype: wild type; Sex: Female; EXPERIMENTAL FACTORS: Strain Canton S; Tissue Female heads; Developmental Stage Adult Female

2010-10-18 | E-GEOD-24608 | biostudies-arrayexpress

Drosophila melanogaster Canton-S small RNA sequence: Adult Male Head

Project description:modENCODE_submission_747 This submission comes from a modENCODE project of Eric Lai. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We plan to generate a comprehensive catalog of expressed and functional microRNAs, and generate biological evidence for their regulatory activity. We plan also to delineate the primary transcription units of microRNA genes. Finally, we plan to annotate other classes of non-miRNA expressed small RNAs, as least some of which may define novel classes of small RNA genes. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf EXPERIMENT TYPE: RNA-seq. BIOLOGICAL SOURCE: Strain: Canton S; Tissue: Male body; Developmental Stage: Adult male; Genotype: wild type; Sex: Male; EXPERIMENTAL FACTORS: Strain Canton S; Tissue Male head; Developmental Stage Adult male; Replicate type: biological;

2012-08-09 | E-GEOD-40034 | biostudies-arrayexpress

Dm Canton-S Adult Female Head Heat Shocked smallRNA RNA-Seq

Project description:modENCODE_submission_3190 This submission comes from a modENCODE project of Eric Lai. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We plan to generate a comprehensive catalog of expressed and functional microRNAs, and generate biological evidence for their regulatory activity. We plan also to delineate the primary transcription units of microRNA genes. Finally, we plan to annotate other classes of non-miRNA expressed small RNAs, as least some of which may define novel classes of small RNA genes. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Keywords: RNA-seq EXPERIMENT TYPE: RNA-seq. BIOLOGICAL SOURCE: Strain: Canton S; Tissue: Female heads; Developmental Stage: Adult Female; Genotype: wild type; Sex: Female; EXPERIMENTAL FACTORS: Strain Canton S; Tissue Female heads; Developmental Stage Adult Female

2010-10-18 | E-GEOD-24604 | biostudies-arrayexpress

Canton S Adult ovaries

Project description:modENCODE_submission_2976 This submission comes from a modENCODE project of Eric Lai. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We plan to generate a comprehensive catalog of expressed and functional microRNAs, and generate biological evidence for their regulatory activity. We plan also to delineate the primary transcription units of microRNA genes. Finally, we plan to annotate other classes of non-miRNA expressed small RNAs, as least some of which may define novel classes of small RNA genes. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Keywords: RNA-seq EXPERIMENT TYPE: RNA-seq. BIOLOGICAL SOURCE: Strain: Canton S; Tissue: Adult ovaries; Developmental Stage: Adult Female; Genotype: wild type; Sex: Female; EXPERIMENTAL FACTORS: Tissue Adult ovaries

2010-10-18 | E-GEOD-24545 | biostudies-arrayexpress

RNA-Seq of head tissue from Drosophila melanogaster Wild Type and Adar5G1 mutant

Project description:We profiled gene expression in flies with and without A-to-I RNA editing (AdarEA mutant Drosophila melanogaster with a Canton-S background).

2019-03-15 | GSE128332 | GEO

RNA-Seq of head tissue from Drosophila melanogaster Wild Type and AdarEA mutant

Project description:We profiled gene expression in flies with and without A-to-I RNA editing (AdarEA mutant Drosophila melanogaster with a Canton-S background).

2017-01-04 | GSE86054 | GEO

Drosophila melanogaster Canton-S small RNA sequence: Adult Male Body

Project description:modENCODE_submission_2751 This submission comes from a modENCODE project of Eric Lai. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We plan to generate a comprehensive catalog of expressed and functional microRNAs, and generate biological evidence for their regulatory activity. We plan also to delineate the primary transcription units of microRNA genes. Finally, we plan to annotate other classes of non-miRNA expressed small RNAs, as least some of which may define novel classes of small RNA genes. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf EXPERIMENT TYPE: RNA-seq. BIOLOGICAL SOURCE: Strain: Canton S; Tissue: Male body; Developmental Stage: Adult male; Genotype: wild type; Sex: Male; EXPERIMENTAL FACTORS: Strain Canton S; Tissue Male body; Developmental Stage Adult male; Replicate type: biological;

2010-10-18 | E-GEOD-24314 | biostudies-arrayexpress

Transcription profiling of Drosophila melanogaster Canton S DHR96 mutants treated with the xenobiotic phenobarbital, DHR96 is an ortholog of xenobiotic nuclear receptors PXR and CAR, and plays a role in mediating xenobiotic responses in Drosophila

Project description:Phenobarbital is a well studied xenobiotic compound. In this study, we describe the genomic responses in fruit flies and examine whether animals mutant for DHR96, an ortholog of xenobiotic nuclear receptors PXR and CAR, plays a role in mediating xenobiotic responses in Drosophila. Experiment Overall Design: Canton S is a commonly used wild type control strain for xenobiotic studies. Wild type or DHR96 mutant flies were starved overnight and then exposed to either sucrose alone or sucrose supplemented with 0.3% Phenobarbital.

2007-11-11 | E-GEOD-5096 | biostudies-arrayexpress

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