Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Comparison of transcriptome between E .faecalis OG1RF and rnjB deletion mutant

ABSTRACT: To globally characterize the role of rnjB gene in E.faecalis, the transcriptome of ∆rnjB and OG1RF grown to exponential phase were compared using DNA microarray analysis

ORGANISM(S): Enterococcus faecalis

PROVIDER: GSE95005 | GEO | 2017/02/17

SECONDARY ACCESSION(S): PRJNA375118

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Transcriptomes of Enterococcus faecalis OG1RF and OG1RF Δbph in planktonic culture

Project description:Liquid cultures of Enterococcus faecalis OG1RF and OG1RF Δbph were grown in tryptic soy broth without added dextrose (TSB-D) for 2 and 4 hr. At each time point, the transcriptomes were compared to identify differentially expressed genes in the Δbph mutant.

2022-03-12 | GSE198051 | GEO

Enterococcus faecalis OG1RF vs. Δrel mutants under control or mupirocin-treated conditions

Project description:Transcriptional profiling to define the stringent response regulon and significance of basal (p)ppGpp levels in E. faecalis OG1RF. RNA was extracted from four replicate samples of each strain of interest and labeled with Cy3. For each replicate, labeled RNA was hybridized to slides along with Cy5-labeled reference RNA, extracted from E. faecalis OG1RF cells grown to mid-log.

2011-12-20 | E-GEOD-34561 | biostudies-arrayexpress

Enterococcus faecalis OG1RF control vs. treatment with vancomycin

Project description:Transcriptional profiling to investigate the effect of drug treatment on the E. faecalis cells. For microarray analysis, E. faecalis OG1RF was grown in FMC medium supplemented with 10 mM glucose to an optical density at 600 nm (OD600) of 0.3 and the cultures were divided in 3 aliquots. One aliquot was collected by centrifugation and immediately frozen (untreated control cells). The other aliquots were treated for 30 or 60 min with 1.25 X the minimum inhibitory concentration (MIC) of vancomycin (10 M-NM-<g ml-1). After an exposure time of 30 or 60 minutes, each of these cultures was also centrifuged and the pellets frozen. RNA was then isolated from each pellet for microarray analysis. This process was repeated 3 additional times, for a total of four replicates of each condition. RNA was extracted from four replicate samples of each condition of interest (control cells grown to OD600 = 0.3 in FMC medium supplemented with 10mM glucose, then treated with vancomycin for 30 or 60 minutes) and labeled with Cy3. For each replicate, labeled RNA was hybridized to slides along with Cy5-labeled reference RNA, extracted from E. faecalis OG1RF cells grown in BHI medium to mid-log.

2013-03-19 | E-GEOD-45300 | biostudies-arrayexpress

Enterococcus faecalis OG1RF control vs. treatment with vancomycin

2013-03-19 | GSE45300 | GEO

Genome-wide Analysis of Enterococcus faecalis OG1RF Gene Expression During Infection

Project description:Changes in Enterococcus faecalis OG1RF gene expression during infection in a rabbit model of subdermal abscess formation were studied using microarray analysis.

2013-12-15 | GSE22391 | GEO

Enterococcus faecalis OG1RF vs. Δrel mutants under control or mupirocin-treated conditions

Project description:Transcriptional profiling to define the stringent response regulon and significance of basal (p)ppGpp levels in E. faecalis OG1RF.

2011-12-20 | GSE34561 | GEO

Enterococcus faecalis OG1RF

Project description:Enterococcus faecalis OG1RF Genome sequencing

| PRJNA419201 | ENA

Enterococcus faecalis OG1RF

Project description:Enterococcus faecalis OG1RF Genome sequencing

| PRJNA419202 | ENA

OG1RF enterococcal cells: wild-type strain (C1) vs. mafR deletion mutant strain (C2)

Project description:Transcriptional profiles of strains OG1RF (wild-type) and OG1RFΔmafR (deletion mutant). The goal was to determine the effect of the enterococcal MafR protein on global gene expression

2015-11-26 | GSE75409 | GEO

Genome-wide Analysis of Enterococcus faecalis OG1RF(pCF10) Gene Expression During Infection

Project description:Changes in Enterococcus faecalis OG1RF(pCF10) gene expression at 4 hours post-infection in a rabbit model of subdermal abscess formation were studied using RNA-seq analysis.

2017-02-09 | GSE58467 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data