Transcriptomics

Dataset Information

22

NSF 20K Oligo Arrays to Dissect Rice Defense Response Pathways


ABSTRACT: With the availability of a high quality draft rice genome sequence, large mutant collections, and gene expression oligo arrays for rice, we are now well positioned to dissect rice defense pathways. To do this, we performed global expression analyses to identify genes that are differentially expressed in 10 mutant lines (i.e., Xa21, NH1ox, NRR1ox, GR978, spl11, spl17, NBS2-PI9ox, MPK5ox, OsCoi1ox, and OsNahG1ox), exhibiting altered defense responses. As controls, we used wild typle varieties same with these mutants. Keywords: disease response Overall design: Two-condition experiment, 10 mutants vs wild type control with treatment or without treatment. Biological replicates: 2-4 control, independently grown and harvested. Technical replicates: 1-2 control. One replicate per array.

INSTRUMENT(S): Rice oligo array version 2

ORGANISM(S): Oryza sativa  

SUBMITTER: Ki-hong Jung  

PROVIDER: GSE9653 | GEO | 2008-05-10

SECONDARY ACCESSION(S): PRJNA103523

REPOSITORIES: GEO

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