Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Comparative gene expression analysis of Porphyromonas gingivalis ATCC 33277 in planktonic and biofilm states

ABSTRACT: The aim of the present study was to compare the genome-wide transcription activities of P.gingivalis under both states, as biofilm and as planktonic growth, using microarray technology.

ORGANISM(S): Porphyromonas gingivalis

PROVIDER: GSE96756 | GEO | 2017/03/20

SECONDARY ACCESSION(S): PRJNA379578

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Gene expression of Porphyromonas gingivalis ATCC 33277 when growing in an in vitro multispecies biofilm

Project description:The aim of the present study to compare the transcriptomic profile of P.gingivalis when growing within an in vitro multispecies biofilm or in a planktonic state, using microarray technology.

2019-06-05 | GSE132157 | GEO

Comparative gene expression analysis of planktonic Porphyromonas gingivalis ATCC 33277 in the presence of a growing biofilm versus planktonic cells

Project description:In this in vitro study, using DNA microarray we investigate the differential gene expression of Porphyromonas gingicalis ATCC 33277 when growing in the presence or in absence of its own monospecies biofilm.

2018-11-17 | GSE122623 | GEO

Comparative gene expression analysis of planktonic Porphyromonas gingivalis ATCC 33277 in the presence of a growing biofilm versus planktonic cells.

Project description: Not available

| S-EPMC6417203 | biostudies-literature

Time course of gene expression during Porphyromonas gingivalis strain ATCC 33277 biofilm formation.

Project description: Not available

| S-EPMC3187161 | biostudies-literature

Gene expression of Porphyromonas gingivalis ATCC 33277 when growing in an in vitro multispecies biofilm.

Project description: Not available

| S-EPMC6706054 | biostudies-literature

Comparative transcriptome analysis of biofilm and planktonic cells of Bacillus cereus ATCC 10987

Project description:Planktonic and biofilm cells of Bacillus cereus ATCC 14579 and ATCC 10987 were studied using microscopy and transcriptome analysis. By microscopy, clear differences could be observed between biofilm and planktonic cells as well as between the two strains. By using hierarchical clustering of the transcriptome data, little difference was observed between the biofilm cells of B. cereus ATCC 14579 and ATCC 10987. Different responses between biofilm and planktonic cells could be identified using transcriptome analysis. Biofilm formation seemed to cause a shift in metabolism with up- or down-regulation of genes involved in different metabolic pathways. Genes involved in motility were down-regulated. No clear up-regulation related to capsular or extracellular polysaccharides was observed. Sporulation was observed in biofilm cells using microscopy, which was corroborated with up-regulation of genes involved in sporulation in biofilm cells. The results obtained in this study provide insight in general and strain specific behavior of B. cereus cells in multicellular communities.

2015-10-10 | GSE24620 | GEO

Comparative transcriptome analysis of biofilm and planktonic cells of Bacillus cereus ATCC 14579

2015-10-10 | GSE24619 | GEO

Transcription profiling of Porphyromonas gingivalis W50 cells grown in biofilm or planktonically

Project description:Transcriptomic profiling of P. gingivalis W50 biofilm grown cells to that of planktonic cells.

2009-01-31 | E-TABM-467 | biostudies-arrayexpress

Effects of gene transcription profiles of Streptococcus suis between planktonic and biofilm states

Project description:To investigate the gene transcription profiles of Streptococcus suis in the planktonic state and biofilm state, we provided samples cultured for 8 h in the planktonic state and samples cultured for 24 h in vitro biofilm. We then performed gene expression profiling analysis using data obtained from RNA-seq of 2 different samples at two time points.

2022-11-15 | GSE217756 | GEO

Pathway analysis for intracellular Porphyromonas gingivalis using a strain ATCC 33277 specific database.

Project description: Not available

| S-EPMC2753363 | biostudies-literature