Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Small RNA Sequencing analysis in Macrophages

ABSTRACT: Analysis of miRNA content of Bone Marrow derived macrophages in resting non-activated conditions

ORGANISM(S): Mus musculus

PROVIDER: GSE97622 | GEO | 2017/06/01

SECONDARY ACCESSION(S): PRJNA382456

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

CEBPB Immunoprecipitation from Bone Marrow Derived Macrophages

Project description:Data from the immunoprecipitation of CEBPB from bone marrow derived macrophages.

2020-03-17 | MSV000085112 | MassIVE

small RNAnext Generation Sequencing of bone marrow-derived macrophages treated in M-CSF withdrawal medium

Project description:The goal of this study is to investigate the presence of novel small RNAs in apoptotic macrophage Method: cultured mouse (bl6 line) bone marrow were differentiated in for 7 days in conditioned medium, in preence of Macrophage-Colony Stimulating Factor (M-CSF). M-CSF also stimulates the survive of macrophages by activating PI3K/AKT pathway. In accordance to previous publication (Lombardo, E., Alvarez-Barrientos, A., Maroto, B., Bosca, L., and Knaus, U.G, 2007, TLR4-mediated survival of macrophages is MyD88 dependent and requires TNF-alpha autocrine signalling, J Immunol 178, 3731-3739) apoptosis was induced in culturaed bone marrow-derived macrophages upon 36 hr of M-CSF withdrawal. Total RNA was isolated and a small RNA library was made using "Small RNA sequencing kit" (Illumina), according to the manufacturer’s instructions.

2015-09-16 | E-GEOD-47408 | biostudies-arrayexpress

MiRNAs sequence of macrophages derived exosoms in WT group and Roquin-1 san:san group.

Project description:We reported the function of Roquin-1 in the miRNA-sorting of macrophages derived exosomes. At first, we used the supernatant of 929 cells to culture the bone marrow derived macrophages (BMDM) from bone marrow cells of WT and Roquin-1 san:san mice. Then, we isolated the macrophages derived exosomes by ultracentrifugation. At last, we performed Next-generation sequencing to detect the differences of miRNA-sorting between WT and Roquin-1 macrophages derived exosomes.

2021-03-20 | GSE169215 | GEO

Intracellular transcriptional adaptation of Mycobacterium tuberculosis complex (MTC) clinical isolates inside resting murine macrophages

Project description:This study uses microarray analyses to examine transcriptional responses of Mycobacterium tuberculosis complex clinical isolates to phagosomal cues encountered inside resting murine bone marrow-derived macrophages 24hr post-infection. Transcript levels of intracellular mycobacteria were compared to extracellular bacteria of the same strain (An aliquot of the inoculum used to infect macrophages was incubated in the absence of macrophages for 24hr in an identical flask). Set of arrays that are part of repeated experiments Keywords: Biological Replicate Biological Replicate Computed

2010-07-09 | E-GEOD-21112 | biostudies-arrayexpress

Expression data from mouse bone marrow derived macrophages (BMDM)

Project description:The transcription factor Spic regulates inflammatory responses and iron metabolism in activated macrophages. We used microarrays to uncover genes regulated by the transcription factor Spic in bone marrow derived macrophages.

2020-07-01 | GSE150519 | GEO

Proteomic analysis of bone marrow-derived macrophages of mice treated with recombinant Ssa1, a protein enriched in the hypoxic secretome of Candida albicans.

Project description:Bone marrow-derived macrophages from mice were treated with recombinant Ssa1, a protein enriched in the hypoxic secretome of Candida albicans.

2024-01-29 | PXD046766 | JPOST Repository

Murine bone marrow derived macrophages: wildtype Vs. CDK5R1 knockout

Project description:Transcriptional profiling of mouse bone marrow derived macrophages comparing wildtype with CDK5R1 knockout. CDK5R1 is an activating parter for CDK5 and synthesized upon TLRs stimaultion. Activated CDK5 has various target substrates, and functions as a key singnaling regulator in macrophages. Two condition experiments: basal state and LPS-stimulated macrophages for 6 hours. Two biological replicates.

2014-11-20 | E-GEOD-63443 | biostudies-arrayexpress

Conditioned medium from bone marrow derived macrophages

Project description:Conditioned medium (CM) from bone marrow derived macrophages untreated or treated with LPS was collected and filtered through a 0.22-μm filter. The filtered CM was sequentially fractionated with 50-kDa and 100-kDa Amicon filters. The 50–100 kDa fraction of CM was analyzed by mass spectrometry.

2022-11-01 | PXD034550 | JPOST Repository

Transcription profiling of wild type and ATF3 -/-mouse bone marrow macrophages stimulated with lipopolysaccharide for 1, 2, 4, 8 and 24 hours

Project description:Time course data from lipopolysaccharide-stimulated wild-type and ATF3 -/- mouse bone marrow macrophages were collected to investigate the transcriptional network in Toll-like recepter 4-activated macrophages.

2006-06-08 | E-TABM-102 | biostudies-arrayexpress

Caspase-4 mediates SREBP1 activation in macrophages

Project description:We identified caspase-4/S1P/SREBP1 pathway that is activated in LPS-treated macrophages. To analyze the functions of caspase-4 and SREBP1 in gene expression in macrophages, we analyzed the effects of deletions of Casp4 and Srebf1 in bone marrow-derived macrophages by RNA-seq.

2023-01-09 | GSE208374 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data