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Comprehensive single cell transcriptional profiling of a multicellular organism by combinatorial indexing

ABSTRACT: We developed a combinatorial indexing strategy to profile the transcriptomes of large numbers of single cells or nuclei (Single cell Combinatorial Indexing RNA-seq or sci-RNA-seq). We applied sci-RNA-seq to profile nearly 50,000 cells from C. elegans at the L2 stage, effectively ~56-fold “shotgun cellular coverage” of its somatic cell composition.

OTHER RELATED OMICS DATASETS IN: PRJNA385514

ORGANISM(S): Caenorhabditis elegans Mus musculus Homo sapiens

PROVIDER: GSE98561 | GEO | 2017/08/17

SECONDARY ACCESSION(S): PRJNA385514

REPOSITORIES: GEO

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