Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Expression profiling of the plant cell wall mutants: pmr5, pmr6 and pmr5 pmr6 double mutants

ABSTRACT: The rosettes from genotype Col-0, pmr5, pmr6 and pmr5 pmr6 double mutant were collected for RNA expression profiling when the plants were 3 weeks old. Keywords: cell wall mutant

ORGANISM(S): Arabidopsis thaliana

PROVIDER: GSE9957 | GEO | 2008/09/01

SECONDARY ACCESSION(S): PRJNA103965

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Transcription profiling of Arabidopsis Col-0, pmr5, pmr6 and pmr5 pmr6 double mutants

Project description:The rosettes from genotype Col-0, pmr5, pmr6 and pmr5 pmr6 double mutant were collected for RNA expression profiling when the plants were 3 weeks old. Experiment Overall Design: The rosettes were collected when the plants were 3 weeks old for RNA extraction and hybridization on Affymetrix microarrays.

2008-10-25 | E-GEOD-9957 | biostudies-arrayexpress

Expression profiling of Arabidopsis wild type Col-0 and pmr5 mutant

Project description:The rosettes from genotype Col-0 and pmr5 mutant were collected for RNA expression profiling when the plants were 3 weeks old.

2012-09-01 | GSE39708 | GEO

Arabidopsis pvip mutants

Project description:Transcriptional comparison of Arabidopsis thaliana pvip1;pvip2 RNAi double mutants against Col-0 wildtype. Tissue used: whole rosettes of 4-week-old plants grown under short-day conditions (8h light; 20oC). 3 biological replicates for each. Control = Col-0 and mutant = pvip1;pvip2. PVIP = Potyvirus-VPg-interacting protein (Dunoyer et al. 2004 J. Virol. 78: 2301-2309).

2009-12-11 | GSE19341 | GEO

Transcriptome of Arabidopsis APS kinase null mutants

Project description:The aim of the experiment is to look at transcriptional changes in null mutants of APS kinase. There are four APS kinase isoforms in Arabidopsis, we are interested in the double mutant APK1/APK2, created by crossing two single salk lines. The transcriptomes of WT (Col-0) plants and the double knockout (ab) will be compared. The plants were grown under controlled environment conditions of 10h day, 14h night, 22 degrees centigrade, 60% humidity for five weeks. 10 whole rosettes were pooled for each replicate, there are three replicates for each genotype. Keywords: Expression profilling by array

2009-11-18 | GSE18980 | GEO

silencing mutants-Transcriptome analysis of silencing mutants and endogenous hairpin KO insertion.

Project description:rs09-06_silencing-muntants - silencing mutants - Find endogenous targets of SDE3, SDE5 and IR71. - Lines IR71 KO n°3, smd8#25, sde3 (Col-0), sde5 (Col-0), Suc-SUL(Col-0) and Col-0 were grown for 11 days on MS solid medium, seedlings were then transferred in MS liquid medium and harvested 2.5 days after. Keywords: genotype comparaison

2010-09-15 | GSE23915 | GEO

Expression profiling of Arabidopsis wild type Col-0 and pmr5 mutant

Project description:The rosettes from genotype Col-0 and pmr5 mutant were collected for RNA expression profiling when the plants were 3 weeks old. The rosettes were collected when the plants were 3 weeks old for RNA extraction and hybridization on Affymetrix microarrays.

2012-09-01 | E-GEOD-39708 | biostudies-arrayexpress

Arabidopsis pvip mutants

2009-12-10 | E-GEOD-19341 | biostudies-arrayexpress

A receptor protein links plant cell wall surveillance with hormone signaling

Project description:The growth and shape of plants is mainly defined by the properties of their cell walls, which dynamically adapt to internal and external cues. Therefore, the cell wall is under constant surveillance to relay feedback information to the cell interior. However, very little is known about how cell wall signaling is integrated with intracellular growth regulation. Here, we have identified a receptor-like protein, RLP44, which conveys information from the cell wall to the brassinosteroid hormone signaling pathway by interacting with the regulatory receptor-like kinase BAK1. This conditional RLP44-mediated signaling activation is required for normal development and stress responses, requires functional brassinosteroid receptor, but is partially independent of the hormone ligand. We sought to identify transcriptional changes in the PMEIox transformant in which an altered pectin modification leads to an induction of the brassinosteroid signalling pathway. In addition we determined which fraction of these expression changes was reverted in the cnu1 and cnu2 suppressor mutants of PMEIox, respectively. Complete transcriptome analysis was performed on Col-0 wild-type as well as the PMEIox transformant and the cnu1 and cnu2 suppressor mutant seedlings grown in the dark for four days.

2014-10-06 | GSE48596 | GEO

RNA-seq analysis of Arabidopsis ATAF2 loss- and gain-of-function mutants

Project description:Four-day old seedlings of Arabidopsis wildtype Col-0, T-DNA insertional mutant ataf2-2, and overexpression line ATAF2ox-3 were collected for total RNA extraction. Three biological replicates were prepared for each genotype.

2021-04-20 | GSE172328 | GEO

A receptor protein links plant cell wall surveillance with hormone signaling

2014-10-06 | E-GEOD-48596 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data