Genomics

Dataset Information

43

Exhaustive profiling in Arabidopsis reveals abundant polysome-associated 24-nt small RNAs including hitherto undescribed AGO5-associated pseudogene-derived siRNAs (psiRNAs) [sRNA]


ABSTRACT: The present study was primarily aimed at expanding the scope of the previous analyses, which focused largely on AGO1-miRNA interactions with total polysomes and MBPs, respectively. Our larger aim was to comprehensively analyze which, among the multiple AGO effector proteins and the numerous cellular sRNA classes of Arabidopsis, interact with the translational machinery. Overall design: 6 samples examined: translating-ribosome affinity immunopurification (TRAP) and duplicates of polysomal and monosomal ribosomal profiling in inflorescences, and small RNA-seq in seedlings.

INSTRUMENT(S): Illumina HiSeq 2500 (Arabidopsis thaliana)

ORGANISM(S): Arabidopsis Thaliana

SUBMITTER: Antonin Marchais  

PROVIDER: GSE99827 | GEO | 2017-12-31

SECONDARY ACCESSION(S): PRJNA389737

REPOSITORIES: GEO

Dataset's files

Source:
Action DRS
GSE99827_RAW.tar Raw
filelist.txt Txt
Items per page:
1 - 2 of 2

Similar Datasets

2017-12-31 | GSE99826 | GEO
2017-12-31 | GSE99828 | GEO
| S-EPMC6800511 | BioStudies
| PRJNA389736 | ENA
2019-12-10 | GSE129651 | GEO
| S-EPMC6545848 | BioStudies
| S-EPMC155994 | BioStudies
| S-EPMC2245894 | BioStudies
| S-EPMC7709984 | BioStudies
| S-EPMC7012466 | BioStudies