Browse
Submit Data
Databases
API
Help

Dataset Information

7 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

GNPS Streptomyces coelicolor vs. bacterial signaling molecules

ABSTRACT: nanoDESI-MS analysis of Streptomyces coelicolor colonies on agar medium. The effect of an actinobacterial signaling metabolite on Streptomyces coelicolor was tested.

INSTRUMENT(S): LTQ FT

ORGANISM(S): Streptomyces Coelicolor

SUBMITTER: Piel, Dorrestein, Moore

PROVIDER: MSV000078682 | GNPS | Mon May 26 08:23:00 BST 2014

REPOSITORIES: GNPS

ACCESS DATA

Json Xml

Similar Datasets

GNPS Streptomyces roseosporus vs. bacterial signaling metabolite

Project description:nanoDESI-MS analysis of Streptomyces roseosporus colonies on agar medium. The effect of an actinobacterial signaling metabolite on Streptomyces roseosporus was tested.

2014-06-05 | MSV000078712 | GNPS

GNPS Streptomyces griseus vs. bacterial signaling metabolite

Project description:nanoDESI-MS analysis of Streptomyces griseus colonies on agar medium. The effect of an actinobacterial signaling metabolite on Streptomyces griseus was tested.

2014-06-05 | MSV000078714 | GNPS

Systems-wide analysis of the GATC-binding nucleoid-associated protein Gbn and its impact on Streptomyces development

Project description:We report the regulatory effect of a novel family of nucleoid-associated protein in Streptomyces coelicolor

2022-04-02 | GSE186136 | GEO

Proteomics survey of Streptomyces coelicolor strains with natural gross chromosome change

Project description:Streptomyces coelicolor normally produce spores with a relatively high heterogeneity, which will produce genetically heterogeneous sub-populations. These sub-populations often exert massive chromosome amplifications and deletions. Cells with gross chromosomal changes produce an increased diversity of secondary metabolites and secrete significantly more antibiotics; however, these changes come at the cost of dramatically reduced individual fitness, providing direct evidence for a trade-off between secondary metabolite production and fitness. We propose that antibiotic production in colonies of the multicellular bacterium Streptomyces coelicolor is coordinated by a division of labour. This proteomics survey will provide more detailed insights into how these chromosomal changed strains behave under normal growth condition.

2020-05-26 | PXD014413 | Pride

GNPS Salinispora tropica and Salinispora arenicola vs. Streptomyces griseoflavus

Project description:nanoDESI analysis of Salinospora tropica or Salinispora arenicola interacting with Streptomyces griseoflavus. The effect of either purified hormaomycin or a Streptomyces griseoflavus hormaomycin overproduction and hormaomycin production deficient strain on Salinispora arenicola and Salinispora tropica were tested

2014-06-05 | MSV000078715 | GNPS

Effects of cAMP supplementation on the transcriptome of Streptomyces coelicolor M145 strain

Project description:To identify unique gene expression in cAMP supplemented Streptomyces coelicolor M145 strain. The genes with different gene expression might be key genes to understand the effects of cAMP supplementation on the transcriptome of Streptomyces coelicolor M145.

2020-11-27 | GSE158810 | GEO

Effects of cAMP supplementation on the transcriptome of Streptomyces coelicolor M1146 strain

Project description:To identify unique gene expression in cAMP supplemented Streptomyces coelicolor M1146 strain. The genes with different gene expression might be key genes to understand the effects of cAMP supplementation on the transcriptome of Streptomyces coelicolor M1146.

2020-11-27 | GSE158811 | GEO

Genome-wide binding site profiling of NdgR in Streptomyces coelicolor

Project description:We identified genome-wide binding regions of NdgR in Streptomyces coelicolor using chromatin immunoprecipitation sequencing (ChIP-seq). We constructed 6×myc-tagged NdgR strain using homologous recombination with myc-tagging vector. Analysis of the sequencing data aligned to Streptomyces coelicolor genome database (NC_003888).

2014-12-29 | GSE59010 | GEO

Evidence of a role for CutRS and actinorhodin in the secretion stress response in Streptomyces coelicolor M145

Project description:This work was carried out to elucidate the proteins that are regulated by the two-component system CutRS in Streptomyces coelicolor M145 and how this response changes in the presence of glucose. A comparison of the whole cell proteomes of Streptomyces coelicolor M145 WT and Streptomyces coelicolor M145 ∆cutRS on both DNA (no glucose) and DNAD (with glucose) was made.

2023-06-16 | PXD040579 | Pride

Cytosolic copper concentration modulates spore germination and secondary metabolism in Streptomyces coelicolor

Project description:We studied the influence of copper in physiological and morphological differentiation of Streptomyces coelicolor. We demonstrate differences in phenotype (germination, growth rate, antibiotic production) and genetic expression between a strain mutated at copper chaperone CopZ (SCO2730::Tn5062), the wild-type strain and a wild-type strain sporulated in a media with 80µM CuSO4. These differences are correlated with the cytosolic copper. Our results demonstrate a pleiotropic effect of copper modulating S. coelicolor development.

2018-12-31 | GSE111126 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data