Metabolomics

Dataset Information

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GNPS - KendrickMassFilter_EvaluationDataset_PUBLIC


ABSTRACT: Data set used in the evaluation of the Kendrick Mass Filter - a computational method of removing oligomer ions in mass spectral data.

INSTRUMENT(S): Q Exactive

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

SUBMITTER: Pieter Dorrestein   Alan Jarmsusch  

PROVIDER: MSV000081544 | GNPS |

REPOSITORIES: GNPS

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Publications

Computational Removal of Undesired Mass Spectral Features Possessing Repeat Units via a Kendrick Mass Filter.

da Silva Ricardo R RR   Vargas Fernando F   Ernst Madeleine M   Nguyen Ngoc Hung NH   Bolleddu Sanjana S   Del Rosario Krizia Karen KK   Tsunoda Shirley M SM   Dorrestein Pieter C PC   Jarmusch Alan K AK  

Journal of the American Society for Mass Spectrometry 20180928 2


Polymers are a common component of chemical background which complicates data analysis and can impair interpretation. Undesired chemical background cannot always be addressed via pre-analytical methods, chromatography, or existing data processing methods. The Kendrick mass filter (KMF) is presented for the computational removal of undesired signals present in MS<sup>1</sup> spectra. The KMF is analogous to mass defect filtering but utilizes homology information via Kendrick mass scaling in combi  ...[more]

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