Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

GNPS_Sytem wide MS class 2018 Food group 2 tomato

ABSTRACT: Metabolite analysis of tomato samples. Samples were extracted in ethanol using FoodOmics protocols. Data were acquired using a Bruker Daltonics maXis Impact and C18 RP-UHPLC. Positive polarity acquisition of LC-MS and LC-MS/MS.

INSTRUMENT(S): maXis

ORGANISM(S): Food Metagenome (ncbitaxon:870726)

SUBMITTER: Pieter Dorrestein

PROVIDER: MSV000082391 | GNPS | Wed May 23 17:00:00 BST 2018

REPOSITORIES: GNPS

ACCESS DATA

Json Xml

Similar Datasets

GNPS_Sytem wide MS class 2018 Food group 4 milk_yogurt

Project description:Metabolite analysis of milk and yogurt samples. Samples were extracted in ethanol using FoodOmics protocols. Data were acquired using a Bruker Daltonics maXis Impact and C18 RP-UHPLC. Positive polarity acquisition of LC-MS and LC-MS/MS.

2018-05-23 | MSV000082387 | GNPS

GNPS_Sytem wide MS class 2018 Food group 1 meat

Project description:Metabolite analysis of meat samples (with and without tetracycline addition). Samples were extracted in ethanol using FoodOmics protocols. Data were acquired using a Bruker Daltonics maXis Impact and C18 RP-UHPLC. Positive polarity acquisition of LC-MS and LC-MS/MS.

2018-05-31 | MSV000082423 | GNPS

GNPS_Sytem wide MS class 2018 Food group 3 coffee

Project description:Metabolite analysis of coffee samples (brewed with hot water and from whole beans). Samples were extracted in ethanol using FoodOmics protocols. Data were acquired using a Bruker Daltonics maXis Impact and C18 RP-UHPLC. Positive polarity acquisition of LC-MS and LC-MS/MS.

2018-05-23 | MSV000082386 | GNPS

GNPS_Sytem wide MS class 2018 Food group 5 tea

Project description:Metabolite analysis of tea samples (brewed with hot water and from tea leaves). Samples were extracted in ethanol using FoodOmics protocols. Data were acquired using a Bruker Daltonics maXis Impact and C18 RP-UHPLC. Positive polarity acquisition of LC-MS and LC-MS/MS.

2018-05-23 | MSV000082388 | GNPS

GNPS Sytem wide MS class 2018 FoodOmics - Full

Project description:Metabolite analysis of food and beverage samples. Samples were extracted in ethanol using FoodOmics protocols. Data were acquired using a Bruker Daltonics maXis Impact and C18 RP-UHPLC. Positive polarity acquisition of LC-MS and LC-MS/MS.

2018-10-09 | MSV000083014 | GNPS

Single cell data: suberized exodermis is required for tomato drought tolerance

Project description:Single cell datasets of tomato (Solanum lycopersicum) seedling roots grown in MS plates.

2023-10-01 | GSE212403 | GEO

Trichoderma harzianum CECT 2413 expression in liquid basal medium or glucose-, chitin-, or tomato plant-containing media

Project description:Trichoderma harzianum CECT 2413 expression in liquid basal medium and in the presence of glucose, chitin or tomato plants. Four different experimental conditions were carried out: basal (MS), glucose (MS-G), chitin (MS-Q) and tomato plant (MS-P). Two biological replicates were analyzed by microarray for each experimental condition. Three independent cultures of mycelium were pooled for each biological replicate.

2010-05-19 | E-GEOD-13776 | biostudies-arrayexpress

Genome-wide transcriptional Responses to Fusarium oxysporum and Tomato mosaic virus in Tomato

Project description:The aim of this study was to compare the tomato global transcriptional profiles in response to host attack by ToMV and Fol in order to identify genomic differences and similarities in incompatible interactions between a foliar and a vascular pathogen. In order to identify a set of genes of interest in tomato plants infected with F. oxysporum f. sp. lycopersici (Fol) and Tomato Mosaic Virus (ToMV) a transcriptional analysis was performed. Tomato genes differentially expressed upon inoculation with Fol and ToMV were identified at 2 days post-inoculation, using an un-inoculated sample as reference.

2015-11-12 | E-GEOD-52336 | biostudies-arrayexpress

Transcription profiling of tomato seedlings Condine wild type vs. Divaricata a-DOX2 mutant

Project description:Gene expression of Condine wild type tomato seedling aerial parts grown on MS medium was compared with that of alpha-dioxygenase2 Divaricata (div) mutant

2009-09-25 | E-MEXP-2265 | biostudies-arrayexpress

Expression data from roots and first two leaves of tomato seedlings growing on regular MS medium or MS medium supplemented with multi-wall carbon nanohorns (25 ug/ml)

Project description:To investigate effects of single-walled carbon nanohorns (SWCNHs) om total expression profile of tomato seeds and plants we introduced SWCNHs in MS agar medium in concentration of 25 ug/ml Objectives for this study included the identification of genes that were up or down-regulated at the transcriptional level in tomato seeds and seedlings in response to SWCNHs Seeds (1 day on medium) and 11-days old seedlings of wild type tomato seedlings (cv. Micro-Tom) growing on regular MS agar medium or MS medium supplemented with carbon nanohorns (25 ug/ml) were selected for RNA extraction and hybridization on Affymetrix microarrays. Keywords: stress responses

2015-01-01 | E-GEOD-57541 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data