Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

GNPS-Integration of Biochemometrics and Molecular Networking to Identify Antimicrobials in Angelica keiskei (pt 1)

ABSTRACT: data files used to produce Figure 1B and Figure 2 (left). cosine similarity score was set to 0.65, and analyses were conducted using LC-MS (Waters Acquity connected to Thermo LTQ Orbitrap XL).

INSTRUMENT(S): LTQ Orbitrap XL

ORGANISM(S): Angelica Keiskei

SUBMITTER: Nadja Cech

PROVIDER: MSV000082641 | GNPS | Fri Jul 20 07:33:00 BST 2018

SECONDARY ACCESSION(S): PXD010521

REPOSITORIES: GNPS

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

GNPS - The secreted metabolome of Streptomyces chartreusis and implications for bacterial chemistry

Project description:RAW Files used to generate Figures 1,2 and 4. Bacterual network with a cosine similarity score cutoff of 0.7. Network was generated from UPLC coupled infusion of extracts and culture supernatants.

2018-01-11 | MSV000081911 | GNPS

GNPS - Spatial Metabolomics Reveals Unique Chemical Responses of an Invasive Fungus in the Cheese Rind Microbiome

Project description:Paper title: Spatial Metabolomics Reveals Unique Chemical Responses of an Invasive Fungus in the Cheese Rind Microbiome. Author List: Carlismari O. Grundmann, Christopher Tomo, Benjamin E. Wolfe, Laura M. Sanchez. Brief description of the data submitted: RAW Files used to generate Figure 3. Microbial network with a cosine similarity score cutoff of 0.7. This network was generated from LC-MS/MS of bacterial and fungal extracts and their interactions.

2025-05-13 | MSV000097876 | GNPS

GNPS - Integration of Biochemometrics and Molecular Networking to Identify Antimicrobials in Angelica keiskei (pt. 2)

Project description:Datasets used to produce Figure 1C and Figure 2 (right).

2018-07-20 | MSV000082643 | GNPS

RNA-seq data of primary human hepatocytes spheroids treated with AZD1979

Project description:Primary human hepatocytes from 3 different donors as 3D spheroids treated with AZD1979 (5 concentrations) and vehicle for 7 h. Data for Figure 4 in connected publication.

2026-01-16 | E-MTAB-15609 | biostudies-arrayexpress

GNPS - Molecular networking as a dereplication strategy -Figure 4

Project description:Molecular networking as a dereplication strategy. Yang JY, Sanchez LM, Rath CM, Liu X, Boudreau PD, Bruns N, Glukhov E, Wodtke A, de Felicio R, Fenner A, Wong WR, Linington RG, Zhang L, Debonsi HM, Gerwick WH, Dorrestein PC. J Nat Prod. 2013 Sep 27;76(9):1686-99. doi: 10.1021/np400413s PubMedID: 24025162 RAW Files used to generate Figure 4. Bacterial network with a cosine similarity score cutoff of 0.65. This network was generated from direct infusion of extracts or direct nanoDESI-MS/MS sampling of eight bacteria, 14 known compounds

2014-02-11 | MSV000078547 | GNPS

DRUG-seq data of HepG2 treated with compounds

Project description:HepG2 treated with 40 compounds (3 concentrations, 0.1xCmax, Cmax and 10xCmax) and vehicle for 7 h. Compounds have different degree of drug-induced liver injury concern. Data for Figure 2 in connected publication.

2026-01-16 | E-MTAB-15601 | biostudies-arrayexpress

DRUG-seq data of primary human hepatocyte spheroids treated with compounds

Project description:Primary human hepatocytes treated with 40 compounds (3 concentrations, 0.1xCmax, Cmax and 10xCmax) and vehicle for 7 h. Compounds have different degree of drug-induced liver injury concern. Data for Figure 2 in connected publication.

2026-01-16 | E-MTAB-15612 | biostudies-arrayexpress

RNA-seq data of primary human hepatocytes spheroids from healthy and Metabolic dysfunction associated steatotic liver disease (MASLD) donors following troglitazone treatment

Project description:Primary human hepatocytes from healthy and Metabolic dysfunction associated steatotic liver disease (MASLD) patients (6 donors each) as 3D spheroids treated with troglitazone (3 concentrations, 0.1xCmax, Cmax and 10xCmax) and vehicle for 7 h. Data for Figure 5 in connected publication.

2026-01-16 | E-MTAB-15610 | biostudies-arrayexpress

GNPS - Molecular networking as a dereplication strategy-Figure 3

Project description:Molecular networking as a dereplication strategy. Yang JY, Sanchez LM, Rath CM, Liu X, Boudreau PD, Bruns N, Glukhov E, Wodtke A, de Felicio R, Fenner A, Wong WR, Linington RG, Zhang L, Debonsi HM, Gerwick WH, Dorrestein PC. J Nat Prod. 2013 Sep 27;76(9):1686-99. doi: 10.1021/np400413s PubMedID: 24025162 RAW Files used to generate Figure 3. Cyanobacterial network with a cosine similarity score cutoff of 0.65. This network was generated when extracts of cyanobacteria (six distinct collections) were separated into nine fractions based on polarity and then analyzed via LC-MS/MS with five known compounds

2014-02-11 | MSV000078548 | GNPS

RNA-seq data of primary human hepatocytes spheroids treated with compounds (experiment 2)

Project description:Primary human hepatocytes from 3 different donors as 3D spheroids treated with 8 compounds (3 concentrations, 0.1xCmax, Cmax and 10xCmax) and vehicle for 7 h. Compounds have different degree of drug-induced liver injury concern. Data for Figure 1 in connected publication. Experiment 2 of 2.

2026-01-16 | E-MTAB-15587 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data