Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

GNPS - IMPRS_Bioinfo_course_Feb2019

ABSTRACT: A thaliana WT and st2a mutant dataset for IMPRS course

INSTRUMENT(S): Q Exactive

ORGANISM(S): Arabidopsis Thaliana (ncbitaxon:3702)

SUBMITTER: Ales Svatos

PROVIDER: MSV000083440 | GNPS | Thu Feb 14 05:23:00 GMT 2019

REPOSITORIES: GNPS

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

GNPS - IMPRS_Bioinfo_course_Feb2019

Project description:A thaliana WT and st2a mutant dataset for IMPRS course

2019-02-14 | MSV000083441 | GNPS

IMPRS_Bioinfo_course_Feb2019

Project description:A thaliana WT and st2a mutant dataset for IMPRS course

2019-02-14 | MSV000083440 | MassIVE

IMPRS_Bioinfo_course_Feb2019

Project description:A thaliana WT and st2a mutant dataset for IMPRS course

2019-02-14 | MSV000083441 | MassIVE

Lipidomics study for investigating the role of the Unfolded Protein Response In Arabidopsis seed filling

2024-12-02 | MTBLS10597 | MetaboLights

Metabolomics study for investigating the specific role of INOSITOL-REQUIRING ENZYME 1A and INOSITOL-REQUIRING ENZYME 1B under chronic endoplasmic reticulum stress in Arabidopsis thaliana

Project description:<p>The Unfolded Protein Response (UPR) is a retrograde, ER-to-nucleus, signalling pathway which is conserved across kingdoms. In plants, it contributes to development, reproduction, immunity and tolerance to abiotic stress. This metabolomic dataset was produced from 14-day-old Arabidopsis thaliana seedlings challenged by tunicamycin (Tm), an antibiotic inhibiting Asn-linked glycosylation in the endoplasmic reticulum (ER), causing an ER stress and eventually activating the UPR. Wild-type (WT), double mutant deficient for two main actors of the UPR (INOSITOL-REQUIRING ENZYME 1A [IRE1A] and INOSITOL-REQUIRING ENZYME 1B [IRE1B]), as well as doubles mutants complemented with either of the WT IRE1 alleles were used as genetic backgrounds in our experimental setup. This allows to distinguish among differentially-overaccumulated metabolites which ones are dependent on IRE1A and/or IRE1B. Also, shoots and roots were harvested separately to determine organ-specific metabolic responses to Tm.</p>

2024-12-02 | MTBLS10609 | MetaboLights

Metabolomics study for investigating chronic endoplasmic reticulum stress in Arabidopsis thaliana

Project description:<p>The Unfolded Protein Response (UPR) is a retrograde, ER-to-nucleus, signalling pathway which is conserved across kingdoms. In plants, it contributes to development, reproduction, immunity and tolerance to abiotic stress. This metabolomic dataset was produced from 14-day-old Arabidopsis thaliana seedlings challenged by tunicamycin (Tm), an antibiotic inhibiting Asn-linked glycosylation in the endoplasmic reticulum (ER), causing an ER stress and eventually activating the UPR. Wild-type (WT), bzip60 single mutant and the double mutant deficient for two main actors of the UPR (INOSITOL-REQUIRING ENZYME 1A and INOSITOL-REQUIRING ENZYME 1B) were used as genetic backgrounds in our experimental setup, allowing to distinguish among differentially-overaccumulated metabolites which ones are dependent on IRE1s and/or bZIP60. Also, shoots and roots were harvested separately to determine organ-specific metabolic responses to Tm.</p>

2024-12-02 | MTBLS10096 | MetaboLights

GNPS-Athaliana_WT_mutant_0-6h_positive mode

Project description:A thaliana WT and ST2a mutant dataset with time points 0-6h post wounding. Data was generated on a Thermo Q Exactive and C18 RP UPLC. Positive polarity acquisition on LC-MS/MS

2019-03-21 | MSV000083612 | GNPS

GNPS-Athaliana_WT_mutant_0-6h_negative mode

Project description:A thaliana WT and ST2a mutant dataset with time points 0-6h post wounding. Data was generated on a Thermo Q Exactive and C18 RP UPLC. Negative polarity acquisition on LC-MS/MS

2019-03-21 | MSV000083611 | GNPS

Comparative Proteomics Analysis of Seed Mucilage from 10 DPA Siliques of Wild-Type and upl3 Mutant Arabidopsis thaliana

Project description:This dataset presents the results of a label-free quantitative proteomic analysis of seed mucilage (from 10 DPA siliques) of Arabidopsis thaliana wild-type (WT) and upl3 mutant plants. UPL3 encodes a HECT-type E3 ubiquitin ligase; by identifying differentially expressed proteins between WT and upl3, we focused on proteins related to cell wall polysaccharides, aiming to investigate the molecular mechanism by which UPL3 regulates seed mucilage structure. The dataset includes raw mass spectrometry data, protein identification results, and quantitative information of differential proteins, which can provide data support for research on the regulation of plant cell wall biosynthesis.

2025-11-26 | PXD071305 |

erwinia chrysanthemi treatments-BOS1 signaling pathway in Arabidopsis thaliana / Erwinia chrysanthemi interaction

Project description:ra06-04_bos1 - erwinia chrysanthemi treatments - BOS1 signaling pathway in Arabidopsis thaliana / Erwinia chrysanthemi interaction - Comparison of 4 transcriptoms : Wt Arabidopsis ecotype infected by Wt Erwinia chrysanthemi strain, bos1 Arabidopsis mutant infected by Wt Erwinia chrysanthemi strain, Wt Arabidopsis ecotype infected by BOS1-non inducing pelBC Erwinia chrysanthemi mutant, Wt Arabidopsis ecotype buffer inoculated. Experiments were repeated 3 times. Keywords: normal vs disease comparison

2009-06-13 | GSE11793 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data