Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

GNPS - MSMS-Chooser - GNPS00002 CORRECT

ABSTRACT: This is the second dataset for the new Chemical Standard to GNPS Library SOP workflow MSMS-Chooser Uploaded and run by the Dorrestein Lab. These are the re-run samples from plate 2, after the instrument was fixed.

INSTRUMENT(S): Q Exactive

ORGANISM(S): Not Applicable

SUBMITTER: Pieter Dorrestein

PROVIDER: MSV000084494 | GNPS | Wed Oct 23 15:13:00 BST 2019

REPOSITORIES: GNPS

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

GNPS - MSMS-Chooser - GNPS00004

Project description:This is the fourth dataset for the new Chemical Standard to GNPS Library SOP workflow MSMS-Chooser Uploaded and run by the Dorrestein Lab.

2019-10-23 | MSV000084493 | GNPS

GNPS - MSMS-Chooser - GNPS00003

Project description:This is the third dataset for the new Chemical Standard to GNPS Library SOP workflow MSMS-Chooser Uploaded and run by the Dorrestein Lab.

2019-10-23 | MSV000084492 | GNPS

GNPS - MSMS-Chooser - GNPS00006

Project description:This is the sixth dataset for the new Chemical Standard to GNPS Library SOP workflow MSMS-Chooser Uploaded and run by the Dorrestein Lab.

2019-10-23 | MSV000084495 | GNPS

GNPS - MSMS-Chooser - GNPS00007

Project description:This is the seventh dataset for the new Chemical Standard to GNPS Library SOP workflow MSMS-Chooser Uploaded and run by the Dorrestein Lab.

2019-10-23 | MSV000084496 | GNPS

GNPS - MSMS-Chooser - GNPS00005

Project description:This is the fifth dataset for the new Chemical Standard to GNPS Library SOP workflow. MSMS-Chooser.

2019-10-21 | MSV000084479 | GNPS

GNPS - MSMS-Chooser Methods - Q Exactive

Project description:The MSMS-Chooser workflow enables the rapid data acquisition and analysis of chemical standards and uploads the MSMS spectra to the community-driven mass spectrometry platform GNPS. Tune methods, instrument methods, and test data generated from the Q Exactive for the MSMS-Chooser workflow can be found here.

| MSV000084286 | GNPS

Pollen2

Project description:Pollen microbiota 2015, second run

| PRJEB14487 | ENA

GNPS - Chemical Standard to GNPS Library - GNPS00002 DO NOT USE

Project description:This is the second test dataset for the new Chemical Standard to GNPS Library SOP workflow. This data was collected when the instrument was in need of maintenance. Data was re-collected at a later date.

| MSV000084287 | GNPS

GNPS_U19_R01_MIND_Stool_Samples_Untargeted - Reuploaded

Project description:Human stool samples analyzed via untargeted metabolomics (LC/MS) from the MIND sample set. Run on Q exactive. Re-uploaded for U19.

2025-06-12 | MSV000098161 | GNPS

Pax7 ablation model enables evaluation of stem cell niche formation in the absence of mouse Pax7 cell competition

Project description:Sequencing files, and processed data correspond to Figure 3 of Regenerating Human Skeletal Muscle Forms an Emerging Niche In Vivo to Support PAX7 cells. Data contains single nucleus RNA seq from Pax7 ablated mdx-NSG mice, control mdx-NSG mice, with or without an injury. These mice offer superior engraftment by human skeletal muscle stem and progenitor cells. Pax7 ablation model enables evaluation of human stem cell niche formation in the absence of mouse Pax7 cell competition. Included in this dataset is everything required to run independent analysis. We have included raw Fastq files and processed files that are ready to be uploaded into Loupe Browser or R-Studio/Seurat V3. To summarize Cloupe Files can be uploaded to Loupe Browers and the BC_Matrix.H5 files can be uploaded directly to R. Furthermore, the RDS files are processed R-program files that can be immediately uploaded into R for analysis. We have included an example R script for users to follow and a few PDFs of excepted UMAPs using all combined files at PCA 35.

2023-09-22 | GSE241368 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data