Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

GNPS - Qiime2 Metabolomics Workshop Dorrestein Lab

ABSTRACT: Input files for the Dorrestein Lab in-house qiime2 workshop for base metabolomics figures.

INSTRUMENT(S): Q Exactive

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

SUBMITTER: Pieter Dorrestein

PROVIDER: MSV000084585 | GNPS | Fri Nov 15 08:17:00 GMT 2019

REPOSITORIES: GNPS

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Qiime2 Metabolomics Workshop Dorrestein Lab

Project description:Input files for the Dorrestein Lab in-house qiime2 workshop for base metabolomics figures.

2019-11-15 | MSV000084585 | MassIVE

Jmjd3-Lab UTX-Lab CUT&Tag

Project description:Jmjd3-Lab UTX-Lab CUT&Tag

| PRJNA776257 | ENA

Cancer: Thriving and Surviving Online Workshop and Study for Cancer Survivors

Project description:Cancer: Surviving and Thriving is a 6-week workshop for cancer survivors. The overall goal of the study is to determine whether an online cancer survivor education and support workshop can have lasting beneficial effects in helping survivors improve their self-management of health skills and quality of life.

| 2076916 | ecrin-mdr-crc

Metal addition E coli Nissle dataset for workshop

Project description:Metal addition E coli Nissle dataset for use in workshop

2019-11-26 | MSV000084628 | MassIVE

Bergthaler Lab: JWG

Project description:Bergthaler Lab: JWG

| PRJEB70319 | ENA

lab organism

Project description:Lab organism Raw sequence reads

| PRJNA490598 | ENA

iMarker lab service projects for Westlake university

Project description:iMarker lab service projects for Westlake university

2025-09-05 | PXD068113 |

Cotter lab CS study

Project description:Cotter lab CS study

| PRJEB32768 | ENA

Cotter Lab FF study

Project description:Cotter Lab FF study

| PRJEB35321 | ENA

Mapping human microbiome drug metabolism by gut bacteria and their genes

Project description:Individuals vary widely in their drug responses, which can be dangerous and expensive due to treatment delays and adverse effects. Growing evidence implicates the gut microbiome in this variability, however the molecular mechanisms remain largely unknown. We measured the ability of 76 diverse human gut bacteria to metabolize 271 oral drugs and found that many of these drugs are chemically modified by microbes. We combined high-throughput genetics with mass spectrometry to systematically identify drug-metabolizing microbial gene products. These microbiome-encoded enzymes can directly and significantly impact intestinal and systemic drug metabolism in mice, and can explain drug-metabolizing activities of human gut bacteria and communities based on their genomic contents. These causal links between microbiota gene content and metabolic activities connect interpersonal microbiome variability to interpersonal differences in drug metabolism, which has implications for medical therapy and drug development across multiple disease indications. Additional data related to this study can also be found by the following links;- Raw sequencing data; <a href='https://www.ebi.ac.uk/ena/data/view/PRJEB31790' rel='noopener noreferrer' target='_blank'>ENA (accession no. PRJEB31790)</a>- Data for Figures; <a href='https://doi.org/10.6084/m9.figshare.8119058' rel='noopener noreferrer' target='_blank'>FigShare</a> - Analysis pipeline schemes, scripts and input files for analzing data and generating figures; <a href='https://github.com/mszimmermann/drug-bacteria-gene_mapping' rel='noopener noreferrer' target='_blank'>GitHub</a> and archived <a href='https://doi.org/10.5281/zenodo.2827640' rel='noopener noreferrer' target='_blank'>Zenodo</a>

2019-07-10 | MTBLS896 | MetaboLights

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data