Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

GNPS - Chlamydomonas reinhardtii batch culture under mixotrophic and autotrophic conditions-GC-MS

ABSTRACT: GC-MS analysis of metabolome of Chlamydomonas reinhardtii cells changing during batch culture development under autotrophic and mixotrophic conditions.

INSTRUMENT(S): Agilent 5975 GC-MS

ORGANISM(S): Chlamydomonas Reinhardtii (ncbitaxon:3055)

SUBMITTER: Puzanskiy Roman

PROVIDER: MSV000086184 | GNPS |

REPOSITORIES: GNPS

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Chlamydomonas growth under nitrogen starvation

Project description:Comparison of gene expression for Chlamydomonas cells grown for 24h, 48h, 72h, 96h under nitrogen starvation

2011-10-19 | GSE33041 | GEO

Chlamydomonas growth under nitrogen starvation

Project description:Comparison of gene expression for Chlamydomonas cells grown for 24h, 48h, 72h, 96h under nitrogen starvation Two-condition experiment, 3 Biological replicates (pooled samples experiment)

2011-10-18 | E-GEOD-33041 | biostudies-arrayexpress

CHO-S transcriptome in batch culture

Project description:Transcriptomic data from CHO-S cells were gathered from multiple time points during batch culture to provide information about gene presence/absence for generation of a CHO-S cell line specific model using the GIMME algorithm.

2016-11-23 | GSE77800 | GEO

Single-Cell RNA Sequencing of Batch Chlamydomonas Cultures Reveals their Heterogeneity and Place Along the Diurnal Cycle

Project description:We did single cell RNA sequencing on cultured chlamydomonas cells. We used two strains, one with cell wall, one without cell wall. The cells were cultured under three different conditions, with iron, without iron and without nitrogen.

2021-01-06 | GSE157580 | GEO

Small RNAs in Chlamydomonas reinhardtii

Project description:RNA populations in Chlamydomonas reinhardtii Keywords: Highly parallel pyrosequencing Small RNAs were prepared from Chlamydomonas reinhardtii total extracts,ligated to a 3' adaptor and a 5' acceptor sequentially, and then RT-PCR amplified. PCR products were reamplified using a pair of 454 cloning primers and provided to 454 Life Sciences (Branford, CT) for sequencing. For technical details, see Tao Zhao, Guanglin Li, Shijun Mi, Shan Li, Gregory J. Hannon, Xiu-Jie Wang, and Yijun Qi. 2007. A Complex System of Small RNAs in the Unicellular Green Alga Chlamydomonas reinhardtii. Genes & Development

2007-05-15 | E-GEOD-7308 | biostudies-arrayexpress

Inositol polyphosphates regulate resilient mechanisms in the green alga Chlamydomonas reinhardtii to adapt to extreme nutrient conditions

Project description:In the actual context of climate changing environments, photosynthetic organisms need to adapt to more extreme conditions. Microalgae can be excellent organisms to understand molecular mechanisms that activate survival mechanisms under stress. Chlamydomonas reinhardtii signaling mutants are extremely useful to decipher which strategies they use to cope with changeable environments. In this study, we conducted prolonged starvation in wild type and vip1-1 Chlamydomonas cells. The mutant vip1-1 has an altered profile of pyroinositol polyphosphates (PP-InsPs) which are signaling molecules present in all eukaryotes. These molecules have been connected to P signaling in other organisms including plants but their implications in other nutrient signaling is still under evaluation. After prolonged starvation, WT and vip1-1 showed important differences in the levels of chlorophyll and PSII activity. We also performed a metabolomic analysis under these conditions and found an overall decrease in different organic compounds such as amino acids including arginine and its precursors and tryptophan which is considered as a signaling molecule itself in plants. In addition, we observed significant differences in RNA levels of genes related to nitrogen assimilation that are under the control of NIT2 transcription factor. Overall our data indicate an important role of PP-InsPs in the regulation of nutrient starvation especially regarding N assimilation and C distribution. These data are of great importance for the generation of resilient strains to be used in open ponds and high capacity bioreactors.

2024-09-17 | GSE276249 | GEO

Chlamydomonas diurnal transcriptome

Project description:We combined a highly synchronous photobioreactor culture system with frequent temporal sampling to characterize genome-wide periodic gene expression in Chlamydomonas.

2015-07-30 | GSE71469 | GEO

Small RNAs in Chlamydomonas reinhardtii

Project description:RNA populations in Chlamydomonas reinhardtii Keywords: Highly parallel pyrosequencing

2007-05-16 | GSE7308 | GEO

Identification of photosystem I components from Chlamydomonas reinhardtii grown under oxic and anoxic conditions

Project description:Photosystem I (PSI) enables photo-electron transfer and regulates photosynthesis in the bioenergetic membranes of cyanobacteria and chloroplasts. Being a multi-subunit complex, its macromolecular organization affects the dynamics of photosynthetic membranes. Here we reveal a chloroplast PSI from the green alga Chlamydomonas reinhardtii that is organized as a homodimer.

2023-03-11 | PXD027067 | Pride

The rotation of primary starter culture mixtures results in batch-to-batch variations during Gouda cheese production

Project description:batch-to-batch variations during Gouda cheese production

| PRJEB58546 | ENA