Metabolomics

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GNPS Xconnector: Retrieving and visualizing metabolites and pathways information from various database sources

ABSTRACT: The diversity of the metabolomics databases arises from the different data types included within the database originating from various sources and experiments can be confusing for biologists and researchers who need further manual investigation for the retrieved data. Xconnector is a software package designed to easily retrieve and visualize metabolomics data from different databases. A human leukemia cell line (HL-60) sample was analyzed to validate the use of Xconnector. The metabolites separation was carried out using a SCIEX Exion LCTM UHPLC system. Mass spectrometric analysis was performed using Triple TOFTM 5600+ system equipped with Duo-SprayTM source operated in the ESI mode.

INSTRUMENT(S): TripleTOF 5600+

ORGANISM(S): Human Leukemia Cell Line (hl-60) Homo Sapiens (ncbitaxon:9606)

SUBMITTER: Sameh Magdeldin  

PROVIDER: MSV000087369 | GNPS | Thu May 06 01:19:00 BST 2021

REPOSITORIES: GNPS

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Xconnector: Retrieving and visualizing metabolites and pathways information from various database resources.

Anwar Ali Mostafa AM   Ahmed Eman Ali EA   Soudy Mohamed M   Osama Aya A   Ezzeldin Shahd S   Tanios Anthony A   Mahgoub Sebaey S   Magdeldin Sameh S  

Journal of proteomics 20210608

Metabolomics databases contain crucial information collected from various biological systems and experiments. Developers and scientists performed massive efforts to make the database public and accessible. The diversity of the metabolomics databases arises from the different data types included within the database originating from various sources and experiments can be confusing for biologists and researchers who need further manual investigation for the retrieved data. Xconnector is a software  ...[more]

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