Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

GNPS Microbiome Core Asthma Blood Samples

ABSTRACT: MAP Project 25 asthma blood samples run for the UCSD Microbiome Core

INSTRUMENT(S): impact HD

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

SUBMITTER: Dorrestein

PROVIDER: MSV000090246 | GNPS |

REPOSITORIES: GNPS

ACCESS DATA

Json Xml

Similar Datasets

Microbiome Core Asthma Blood Samples

Project description:MAP Project 25 asthma blood samples run for the UCSD Microbiome Core

2022-09-01 | MSV000090246 | MassIVE

GNPS - Asthma Cohort Blood Samples Rerun Metabolomics

Project description:Untargeted LC/MS (re-run on Q-exactive Mass Spectrometer) metabolomics of blood samples for Asthma cohort collected as part of the Microbiome Core.

2023-03-06 | MSV000091421 | GNPS

Neonatal Blood Spots from the Emory University African American Microbiome in Pregnancy Cohort

Project description:Newborn screening blood spots were obtained for neonates born to women enrolled in the Emory University African American Microbiome in Pregnacy Cohort

2021-07-01 | GSE154446 | GEO

Effect of gut microbiome transplant from neonates of particle-exposed mothers on the epigenome of dendritic cells

Project description:In our model the newborns of asthmatic mother mice or of mothers exposed to air pollutant particles are born with a predisposition to asthma. Gut microbiome of these pups is altered, and the transplant of the pups’ microbiome (GMT) has conferred the asthma predisposition to naïve recipients. We hypothesized that bacteria alter metabolomic profile in the gut, which polarizes the dendritic cells (DC) in the recipient by affecting epigenetic regulation in these key decision-maker cells. Here we examined DNA methylation profiles in the recipient host’s DCs to test the prediction that GMT confers alterations in DNA methylation (not seen with sterilized GMT).

2024-04-01 | GSE247470 | GEO

Human blood microbiome

Project description:Metagenome analysis of fungal and bacterial blood microbiome in healthy indiviuals

| PRJEB41436 | ENA

Functional genome and microbiome in blood of goats affected by the gastrointestinal pathogen Haemonchus contortus

Project description:The Alpine goat Capra aegagrus hircus is parasitized by the barber pole worm (Haemonchus contortus). This relationship results in changes that affect the gene expression of the host, the pest, and the microbiome of both. Hematological parameters indicating genes that are expressed and/or the % Composition of abundant and diverse microbial flora are reflective of infestation. We identified responses to barber pole worms using blood-based analysis of transcripts and the microbiome. Seven (7) days post-inoculation (dpi) we identified 7,627 genes associated with different treatment types.

2021-03-26 | GSE169607 | GEO

COVID-19 asthma microbiome

Project description:COVID-19 asthma microbiome

| PRJEB51261 | ENA

The Dynamics of the Vaginal Microbiome During Infertility Therapy with In Vitro Fertilization-Embryo Transfer

Project description:Clinical treatment protocols for infertility with in vitro fertilization-embryo transfer (IVF-ET) provide a unique opportunity to assess the human vaginal microbiome in defined hormonal milieu. Herein, we have investigated the association of circulating ovarian-derived estradiol (E2) and progesterone (P4) concentrations to the vaginal microbiome. Thirty IVF-ET patients were enrolled in this study, after informed consent. Blood was drawn at four time points during the IVF-ET procedure. In addition, if a pregnancy resulted, blood was drawn at 4-to-6 weeks of gestation. The serum concentrations of E2 and P4 were measured. Vaginal swabs were obtained in different hormonal milieu. Two independent genome-based technologies (and the second assayed in two different ways) were employed to identify the vaginal microbes. The vaginal microbiome underwent a transition with a decrease in E2 (and/or a decrease in P4). Novel bacteria were found in the vagina of 33% of the women undergoing IVF-ET. Our approach has enabled the discovery of novel, previously unidentified bacterial species in the human vagina in different hormonal milieu. While the relationship of hormone concentration and vaginal microbes was found to be complex, the data support a shift in the microbiome of the human vagina during IVF-ET therapy using standard protocols. The data also set the foundation for further studies examining correlations between IVF-ET outcome and the vaginal microbiome within a larger study population.

2011-10-24 | E-MEXP-2958 | biostudies-arrayexpress

GNPS - Asthma Cohort Fecal Samples Metabolomics

Project description:Untargeted LC/MS metabolomics of stool samples for Asthma cohort collected as part of the Microbiome Core.

2023-03-06 | MSV000091420 | GNPS

Epigenetic differences in long non-coding RNA expression in Finnish and Russian Karelia teenagers with contrasting risk of allergy and asthma

Project description:The objective of the study was to investigate long non-coding RNA (lncRNA) expression profiles of blood mononuclear cells (PBMC), to identify lncRNAs that act at the interphase of microbiome-mediated immune homeostasis in allergy/asthma.

2024-04-04 | GSE200158 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data