Dataset Information

GNPS - The nutritional and host environment shapes community ecology and keystone functions in a synthetic gut bacterial community

ABSTRACT: Microbe-microbe interactions are critical for gut microbiome function. A challenging task to understand health and disease-related microbiome signatures is to move beyond descriptive community-level profiling towards disentangling microbial interaction networks. Here, we aimed to determine members taking on a keystone role in shaping the community ecology of a widely used synthetic bacterial community (OMM12).

INSTRUMENT(S): TripleTOF 6600

ORGANISM(S): Bacteria (ncbitaxon:2) Mus Sp. (ncbitaxon:10095)

SUBMITTER: Barbara Stecher-Letsch

PROVIDER: MSV000090704 | GNPS | Mon Nov 14 04:35:00 GMT 2022

REPOSITORIES: GNPS

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Publications

Nutritional and host environments determine community ecology and keystone species in a synthetic gut bacterial community.

Weiss Anna S AS Niedermeier Lisa S LS von Strempel Alexandra A Burrichter Anna G AG Ring Diana D Meng Chen C Kleigrewe Karin K Lincetto Chiara C Hübner Johannes J Stecher Bärbel B

Nature communications 20230808 1

A challenging task to understand health and disease-related microbiome signatures is to move beyond descriptive community-level profiling towards disentangling microbial interaction networks. Using a synthetic gut bacterial community, we aimed to study the role of individual members in community assembly, identify putative keystone species and test their influence across different environments. Single-species dropout experiments reveal that bacterial strain relationships strongly vary not only i ...[more]

PMID: 37553336

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Project description:Oral health is associated with a symbiotic microbial community and host-microbe homeostasis is maintained by the controlled immune response. Various factors can disrupt this homeostasis. Dysbiosis, which is characterized by increased immune response and a shift in the microbiome, contributes the pathogenesis of peri-implantitis. Peri-implant mucosa and commensal bacteria play important roles in the maintenance of host-microbe homeostasis, but little is known about how they interact. We have therefore investigated the early host-microbe interaction between a commensal multispecies biofilm (Streptococcus oralis, Actinomyces naeslundii, Veillonella dispar, Porphyromonas gingivalis) and peri-implant mucosa at 24 and 48 h. Our in vitro peri-implant mucosa-biofilm model contained organotypic oral mucosa, implant material and biofilm. After 24 h, the biofilm induced a modest innate immune response in the peri-implant mucosa by the upregulation of 5 genes related to immune and inflammatory response and the increased secretion of IL-6 and CCL20. This controlled immune response protected tissue integrity and the peri-implant mucosa remained intact. The secreted antibacterial proteins human β-Defensins-1, -2, and CCL20 controlled the overgrowth of the biofilm by reducing its volume - without affecting the live/dead ratio or bacterial distribution. Thus, host-microbe homeostasis was established within the first 24 h. In contrast, host-microbe homeostasis was disrupted after 48 h. The mucosa was damaged and detached from the implant, due to the induced downregulation of cell adhesion related genes. The immune response was enhanced by upregulation of additional genes related to the immune and inflammatory response and increased secretion of IL-1β, TNF-α, and CCL20. Moreover, bacterial distribution was altered, with an increased proportion of V. dispar. The disrupted host-microbe homeostasis could lead to incipient dysbiosis. This deeper understanding of the early host-microbe interaction at the peri-implant site may provide the basis for new strategies to improve the prevention and therapy of peri-implant diseases.

Dataset Information

GNPS - The nutritional and host environment shapes community ecology and keystone functions in a synthetic gut bacterial community

Publications

Nutritional and host environments determine community ecology and keystone species in a synthetic gut bacterial community.

Similar Datasets

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