Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

GNPS - 20231122 ReFrame drug reupload separate file name for pos and neg ionization

ABSTRACT: MS/MS analysis of standards in ReFrame drug library. Positive and negative analysis have different file names.

INSTRUMENT(S): Q Exactive

ORGANISM(S): Na

SUBMITTER: Pieter C Dorrestein

PROVIDER: MSV000093469 | GNPS | Wed Nov 22 17:03:00 GMT 2023

REPOSITORIES: GNPS

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

20231122 ReFrame drug reupload separate file name for pos and neg ionization

Project description:MS/MS analysis of standards in ReFrame drug library. Positive and negative analysis have different file names.

2023-11-22 | MSV000093469 | MassIVE

Multi-omics analysis of BCG macrophage activation

Project description:THP-1-derived macrophages were infected with M. bovis BCG. Separately, proteomic analysis was performed on histones (file names containing IKP) and the total proteome (file names containing JMI).

2024-10-08 | PXD051187 | Pride

Sequences that influence mRNA trans splicing and polyadenylation in trypanosoma brucei.

Project description:Trypanosoma brucei library consisting of a pool of reporters with the 14Ts polypyrimidine tract replaced with 11 random nucleotides. The library is treated with 0.2ug/ml of puromycin, then survivors are grown in 1ug/ml puromycin. The reporters are recovered from the untreated and the 2 two treatment groups and PCR amplicons targeting the the random sequences identified by HTS. The drug treated samples were analysed in triplicates and untreated in duplicates. The results are paired reads, file names ending _1 are one strand and _2 are the other strand.

2022-04-29 | E-MTAB-11628 | biostudies-arrayexpress

Fyn- and Abl-driven interactome and post-translational modifications of DCBLD1 and DCBLD2

Project description:Three related datasets are included, all from immunoprecipitations of FLAG-tagged DCBLD1 and DCBLD2 (human) from 293 cells. Letters at the end of file names denote regions of each gel lave from highest (“A”) to lowest (“B”-X) molecular weight. File names containing “SILAC” are part of a dataset composed of 3 biological replicates (“T1”,”T2”,”T3” in file name) run of 10% or 15% gels (“10” or “15” in file name). DCBLD1 or DCBLD2 were immunoprecipitated from cells alone (light SILAC condition) or with Fyn/Abl (heavy SILAC condition). “Mock”, “Fyn” alone, or “Abl” alone in file names denote control immunoprecipitates, in which the light condition was a mock transfection and the heavy was either a mock or had Fyn/Abl expressed alone. Trypsin was used as the proteolytic enzyme. File names beginning with “Label_free” are part of datasets from LC-MS/MS analysis of DCBLD1 or DCBLD2 immunoprecipitates from 293 lysates. Prior to LC-MS/MS analysis, immunoprecipitates were digested with trypsin and GluC. Only DCBLD1 and DCBLD2 protein bands were analyzed via LC-MS/MS. File names containing “zebrafish” are part of datasets from LC-MS/MS analysis of DCBLD2 immunoprecipitates from 293 extracts that were then incubated with zebrafish extracts. These datasets include tryptic peptides from both human and zebrafish proteins.

2020-08-07 | PXD017723 | Pride

Ion Mobility-Reframe Drug Library

Project description:Crude standards of reframe drug mixtures were analyzed on a TimsTOF Pro2 coupled to Agilent LC system for library generation.

2025-06-18 | MSV000098263 | MassIVE

POS-1 Promotes Endo-mesoderm Development by Inhibiting the Cytoplasmic Polyadenylation of neg-1 mRNA.

Project description: Not available

| S-EPMC4507413 | biostudies-literature

Proteomics data of Escherichia phage vB_EcoS-EE09 isolated from wastewater treatment plant effluent and its infected and non-infected host E. coli DSM613

Project description:This dataset was created to (i) compare the protein expression of E. coli DSM613 cells infected and uninfected with phage vB_EcoS-EE09 and (ii) detect structural proteins of phage vB_EcoS-EE09. Thus, this set provides proteomic data of three setups: 1. Uninfected E. coli DSM613 (file names [file ID]: 04_22A [F40]; 13_ecolicontrol_01 [F13]; 14_ecolicontrol_02 [F14]) 2. E. coli DSM613 infected with phage vB_EcoS-EE09 (file names [file ID]: 02_13A [F39]; 27_ecoliinfected_01 [F27]; 28_ecoliinfected_02 [F28]) 3. Cell-free phage lysate of phage vB_EcoS-EE09 (sample name: 01_EE09)

2023-11-13 | PXD046455 | Pride

GNPS - Ion Mobility-Reframe Drug Library

Project description:Crude standards of reframe drug mixtures were analyzed on a TimsTOF Pro2 coupled to Agilent LC system for library generation.

2025-06-18 | MSV000098263 | GNPS

Transplantation of Allogeneic PW1<sup>pos</sup>/Pax7<sup>neg</sup> Interstitial Cells Enhance Endogenous Repair of Injured Porcine Skeletal Muscle.

Project description: Not available

| S-EPMC6059014 | biostudies-literature

Circadian rhythms of ribosome binding for Drosophila astrocyte RNAs

Project description:Raw RNAseq data (fastq) files that were analyzed for circadian changes in RNA ribosome binding. The numbers in the file names (00 - 44) represent circadian time (0 to 44 hours in constant dark and constant temperature). Two separate sets of samples (independent biological replicates) were collected over a 44-hour period of time.

2021-09-06 | GSE183282 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data