Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

GNPS - Metabolomic data from a cerebral malaria case-control study in Mali

ABSTRACT: Metabolome data from cerebral malaria cases and uncomplicated malaria controls in a case-control study in Mali.

INSTRUMENT(S): LTQ Orbitrap Velos Pro

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

SUBMITTER: Dr. Mark Travassos

PROVIDER: MSV000096913 | GNPS | Wed Jan 22 13:12:00 GMT 2025

REPOSITORIES: GNPS

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Metabolomic data from a cerebral malaria case-control study in Mali

Project description:Metabolome data from cerebral malaria cases and uncomplicated malaria controls in a case-control study in Mali.

2025-01-22 | MSV000096913 | MassIVE

Proteomic data from a cerebral malaria case-control study in Mali

Project description:Proteome data from cerebral malaria cases and uncomplicated malaria controls in a case-control study in Mali.

2025-03-25 | PXD058621 | Pride

International Glioma Case-Control Study

Project description:International Glioma Case-Control Study

| PRJNA377600 | ENA

A nested case-control study to investigate drivers for metastatic disease in breast cancer

Project description:The purpose of this study was to improve prediction of patients at high-risk for metastatic disease utilizing a nested case-control design that uniquely enables enrichment for relevant phenotypes. We identified all women diagnosed with primary breast cancer from January 1, 1997, to December 31, 2005, in the Stockholm health care region. Patients developing distant metastatic disease (cases) were selected and controls (free from distant disease) were randomly matched by adjuvant therapy, age and calendar period at diagnosis. The nested case-control study included 768 study subjects with clinical information and gene expression arrays (Human Cancer G110). Study subjects were randomly and equally divided into training set (discovery) or testing (validation) set. Metastatic onset prediction was then compared including either clinical variables only or combining clinical and genetic information. Differentially expressed genes and pathways between cases and controls included a wide-spectrum of well known as well as candidate regulators of the metastatic cascade.

2015-07-08 | GSE48091 | GEO

A nested case-control study to investigate drivers for metastatic disease in breast cancer

2014-11-03 | E-GEOD-48091 | biostudies-arrayexpress

A nested case-control study to investigate drivers for metastatic disease in breast cancer (QC substudy)

2016-05-28 | GSE81954 | GEO

NCI-Maryland Prostate Cancer Case-Control Study

Project description:NCI-Maryland Prostate Cancer Case-Control Study

| PRJNA845916 | ENA

NCI-Maryland Prostate Cancer Case-Control Study

Project description:NCI-Maryland Prostate Cancer Case-Control Study

| PRJNA845917 | ENA

A nested case-control study to investigate drivers for metastatic disease in breast cancer (QC substudy)

Project description:This is a quality control (QC) substudy of GSE48091. The QC substudy comprises gene-expression profiling of re-extracted tumor RNA for a subset of the tumours in the full study. As background, a population-based cohort study of metastatic breast cancer patients was first designed. Thereafter, a case-control study nested in the corresponding population-based cohort of primary breast cancer patients was designed by selecting distant metastasis-free controls to each case. Tumor RNA was extracted in the same order. All RNA was profiled on microarrays in randomized order. For quality control, RNA was also re-extracted (new tumor piece) in a randomized order for randomly selected cases-controls sets and profiled with the rest. Keywords: Expression profiling by array The nested case-control study included 768 study subjects corresponding to 623 primary tumor samples. This QC substudy comprises 97 of the study subjects (all different primary tumor samples). Details concerning case-control status are given in the samples section. This Series includes a re-analysis of 97 samples from GSE48091. The file "full_data_matrix.txt" includes the re-normalized values for the 97 samples from GSE48091 and the normalized values for the 97 new samples from the same patients that were analyzed together.

2016-05-28 | E-GEOD-81954 | biostudies-arrayexpress

Lack of associations of microRNAs with severe NAFLD in people living with HIV: Discovery case-control study

Project description:The aim of this discovery case-control study was to identify patterns of differential expression of microRNAs in people living with HIV (PLWH) and assess their diagnostic value for non-alcoholic fatty liver disease (NALFD). Cases were defined as patients with severe NAFLD and controls as patients without NAFLD, characterized using the controlled attenuation parameter (CAP). Cases and controls were matched 1:1 for age, sex, body mass index, CD4+ lymphocyte count, active HCV infection, and ART regimen. Serum 2,083 simultaneous microRNA transcripts were analyzed using HTG technology and compared between cases and controls. Forty-five patients, 23 cases, and 22 controls were included in the study. In the analysis of the expression pattern of the 2,083 microRNAs, no differential expression patterns were found between both groups of patients included in the study. Analysis of the microRNA transcriptome profile of nonobese PLWH with severe NAFLD did not appear to differ from that of patients without NAFLD. Thus, microRNA might not serve as a proper biomarker for predicting severe NALFD in this population.

2023-05-03 | E-MTAB-12974 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data