Browse
Submit Data
Databases
API
Help

Dataset Information

29 Views

3 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 1009

Human Ureter project

ABSTRACT: Data from ProteomeXchange, PXD ID: PXD002620. File: U4.mzml. From ProteomeXchange: {{i}} The data includes Human ureter protome fractionated into 10 fractions and subjected to insolution digestion{{/i}}

INSTRUMENT(S): Instrument

ORGANISM(S): Homo_sapiens_viruses, Human

DISEASE(S): Not Available

SUBMITTER: Yamamoto T, et al.

PROVIDER: GPM32320017471 | GPMDB |

REPOSITORIES: GPMDB

ACCESS DATA

Json Xml

Similar Datasets

Human Ureter project - A proteomic glimpse into human ureter proteome

Project description:The data includes Human ureter protome fractionated into 10 fractions and subjected to insolution digestion

2015-07-31 | PXD002620 | Pride

Human Ureter project

Project description:The data includes Human ureter protome fractionated into 10 fractions and subjected to insolution digestion

2017-03-29 | MSV000080796 | MassIVE

Chromosome 11-Centric Human Proteome Project

Project description:For the analysis of chromosome 11-centric human proteome, we analyzed the human brain hippocampal proteome. The samples from brain tissues were extensively off-gel fractionated by 12 fractions and analyzed by a high resolution mass spectrometer, Orbitrap XL ETD with collision induced dissociation, after LC separation using C18 column.

2016-10-10 | PXD000395 | Pride

Crosslinking Interaction Network of Human Mitochondria

Project description:Isolated human mitochondria underwent DSSO crosslinking. Following treatment, the mitochondria were separated into soluble and insoluble fractions. Both fractions were then subjected to multidimensional fractionation, including SCX and hSAX. The fractionated peptides were subsequently analyzed using CL-MS. FDR-based error estimation facilitated the creation of a comprehensive mitochondrial interaction network, revealing novel protein-protein interactions.

2025-05-06 | PXD052832 | Pride

An integrated landscape of mRNA and protein isoforms [PacBio]

Project description:Current proteomic methods are not well suited to detect protein isoforms. On the one hand, standard shotgun (that is, bottom-up) proteomics involves digestion of proteins into peptides. While this approach identifies many proteins, it results in a loss of isoform information. On the other hand, mass spectrometric analysis of intact proteins (that is, top-down proteomics) distinguishes protein isoforms but only covers a small subset of the proteome. We developed peptide correlation profiling (PepCP) as a method to obtain protein-level information from peptide-centric (that is, bottom-up proteomic) data: First, proteins are fractionated by SDS-PAGE to polypeptides of different length. Second, individual protein fractions are digested into peptides. Third, peptides are identified and quantified in all fractions using quantitative mass spectrometry-based proteomics. Finally, peptide abundance profiles across fractions are analysed to obtain protein-level information.

2026-03-12 | GSE261578 | GEO

An integrated landscape of mRNA and protein isoforms [NGS]

2026-03-12 | GSE261379 | GEO

Subcellular RNA fractions of HSV-1 infected primary human fibroblasts

Project description:Primary human foreskin fibroblasts (HFF) were infected with wild-type simplex virus 1 (HSV-1) strain 17 at a multiplicity of infection (MOI) of 10. Subcellular RNA fractions including total RNA, cytoplasmic RNA, nucleoplasmic RNA and chromatin-associated RNA were prepared and subjected to RNA-seq

2018-03-08 | GSE100576 | GEO

CAGE sequencing of iPSC and Human dermal fibroblasts

Project description:CAGE sequencing of iPSC and Human dermal fibroblasts, total RNA and fractionated into nuclear, cytoplasmic and chromatin fractions.

2021-04-28 | E-MTAB-10384 | biostudies-arrayexpress

RNA sequencing of iPSC and Human dermal fibroblasts

Project description:RNA sequencing of iPSC and Human dermal fibroblasts, total RNA and fractionated into nuclear, cytoplasmic and chromatin fractions.

2021-04-28 | E-MTAB-10383 | biostudies-arrayexpress

Subcellular RNA fractions of primary human fibroblasts infected with the HSV-1 delta-ICP27 mutant

Project description:Primary human foreskin fibroblasts (HFF) were infected with the ICP27 null mutant of herpes simplex virus 1 (HSV-1) strain 17 at a multiplicity of infection (MOI) of 10. Subcellular RNA fractions including total RNA, cytoplasmic RNA, nucleoplasmic RNA and chromatin-associated RNA were prepared and subjected to RNA-seq

2020-04-09 | GSE128880 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data