Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Dynamic expression of intra-and extracellular proteome and the influence of epiphytic bacteria for Nostoc flagelliforme in response to rehydration

ABSTRACT: In the present work, we analyzed the intra-and extracellular proteome of N. flagelliforme over a complete rehydration period both in sterilization and natural condition for the first time.

ORGANISM(S): Cyanobacteria

SUBMITTER: Cuihong Wan

PROVIDER: PXD016895 | iProX | Mon Dec 23 00:00:00 GMT 2019

REPOSITORIES: iProX

ACCESS DATA

Json Xml

Publications

Dynamic expression of intra- and extra-cellular proteome and the influence of epiphytic bacteria for Nostoc flagelliforme in response to rehydration.

Wang Bing B Yang Jingjing J Xu Chen C Yi Lanxing L Wan Cuihong C

Environmental microbiology 20200207 4

Nostoc flagelliforme is well known for its strong ecological adaptability in inhabiting desert biological soil crusts. However, the mechanism of its recovery from quiescent to active state after prolonged dormancy remains poorly characterized. Especially how exoproteome be related to the adaptive strategies and participate in the microalgae-bacteria interaction. In the present work, we analysed the intra- and extra-cellular proteome of N. flagelliforme over a complete rehydration period both in ...[more]

PMID: 31997460

Similar Datasets

YDRseries3, Yeast desiccation / rehydration time course

Project description:This series represents Experiment 3 of the yeast desiccation / rehydration time course analysis. Samples include Control, 50% dry, Dry, 15 min. post rehydration, 45 min. post rehydration, 90 min. post rehydration, and 360 min. post rehydration. Keywords = BY4743 Keywords = desiccation Keywords = glucose-limited Keywords = rehydration Keywords = yeast Keywords: time-course

2005-08-01 | GSE1313 | GEO

YDRseries2, Yeast desiccation / rehydration time course

Project description:This series represents Experiment 2 of the yeast desiccation / rehydration time course analysis. Samples include Control, 50% dry, Dry, 15 min. post rehydration, 45 min. post rehydration, 90 min. post rehydration, and 360 min. post rehydration. Keywords = BY4743 Keywords = desiccation Keywords = glucose-limited Keywords = rehydration Keywords = yeast Keywords: time-course

2005-08-01 | GSE1312 | GEO

YDRseries1, Yeast desiccation / rehydration time course

Project description:This series represents Experiment 1 of the yeast desiccation / rehydration time course analysis. Samples include Control, 50% dry, Dry, 15 min. post rehydration, 45 min. post rehydration, 90 min. post rehydration, and 360 min. post rehydration. Keywords = BY4743 Keywords = desiccation Keywords = glucose-limited Keywords = rehydration Keywords = yeast Keywords: time-course

2005-08-01 | GSE1311 | GEO

Two week Storage and Rehydration of HEK 293 Cells at Ambient Temperature

Project description:This series represents the rehydration series of the human 293h media depleted storage on agarose / rehydration condition course analysis. Samples include Control Monolayer, 0 hr desiccation, 0 hr rehydration, 6 hr rehydration, 24 hr rehydration, and 72 hr rehydration. Keywords = 293h cells Keywords = desiccation Keywords = rehydration Keywords = spheroid Keywords = stabilization Keywords = ambient temperature Keywords: other

2005-08-01 | GSE1455 | GEO

Bryum argenteum rehydration proteome

Project description:The desiccation-tolerant bryophyte Bryum argenteum was subjected to desiccation and followed by rehydration. The purpose of this study was to quantify the proteome changes upon early rehydration (rehydrated 2 h after desiccation) and 24 h of rehydration.

2016-06-19 | MSV000079840 | MassIVE

Transcription profiling of human HEK 293 cells after storage at ambient temperature and rehydration

2008-06-11 | E-GEOD-1455 | biostudies-arrayexpress

Transcription profiling of the response of Saccharomyces cerevisiae to desiccation and rehydration: Series 1

2007-10-23 | E-GEOD-1311 | biostudies-arrayexpress

Transcription profiling of the response of Saccharomyces cerevisiae to desiccation and rehydration: Series 3

2007-10-23 | E-GEOD-1313 | biostudies-arrayexpress

Transcription profiling of the response of Saccharomyces cerevisiae to desiccation and rehydration: Series 2

2007-10-23 | E-GEOD-1312 | biostudies-arrayexpress

Gene expression in Arthrobacter sp AZCC_0090 across the desiccation-rehydration continuum.

Project description:Microbes inhabiting soils experience periodic water deprivation. The effects of desiccation on DNA, protein, and membrane integrity are well-described. However, the effects of drying and rehydration on the composition of cellular RNA and metabolites are still poorly understood. Here, we describe how slow drying and rehydration with water vapor influence the composition of RNAs and metabolites in a soil Arthrobacter. Drying reduced cultivability relative to hydrated controls, but rehydration of dried cells with water vapor restored cultivability. The fraction of 16S and 23S rRNA to the total RNA pool was constant throughout the experiment, irrespective of treatment. mRNA profiles were invariant in desiccated cells, changing only in response to drying or rehydration. Six transcriptional modules were identified that showed distinct expression patterns in desiccated-rehydrated samples, relative to hydrated controls, including desiccation-responsive and rehydration-specific profiles. Targeted metabolomics also showed a static metabolic state during desiccation. A cluster of metabolites enriched in ribonucleosides and nucleobases was responsive to desiccation and rehydration. Collectively, these results are consistent with the relative stability of mRNA and metabolite profiles in desiccated Arthrobacter. These results imply that stable mRNA in dry dormant cells and intracellular RNA recycling may obscure interpretations of RNA-based environmental analyses that use RNA as a marker of microbial activity.

2025-09-30 | GSE309279 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data