Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

1 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Neonatally Dynamic Developmental Landscape of Ileum at Single Cell Level

ABSTRACT: Neonatally Dynamic Developmental Landscape of Ileum at Single Cell Level

ORGANISM(S): Sus Scrofa Domesticus

SUBMITTER: Qingshi Meng

PROVIDER: PXD023498 | iProX | Mon Jan 11 00:00:00 GMT 2021

REPOSITORIES: iProX

ACCESS DATA

Json Xml

Similar Datasets

The dynamic transcriptional landscape of mammalian organogenesis at single cell resolution

Project description:The dynamic transcriptional landscape of mammalian organogenesis at single cell resolution

| PRJNA490754 | ENA

Single-cell analysis of cardiogenesis reveals basis for organ level developmental defects

Project description:Single-cell analysis of cardiogenesis reveals basis for organ level developmental defects

| PRJNA521061 | ENA

transcriptional landscape of Germ cell differentiation at single cell resolution

Project description:Single cell sequencing technologies are powerful tools for the dissection of large regulatory networks and their role in directing developmental trajectories. The goal of this project is to profile the transcriptional landscape of germ cell development in the mouse male embryo at single cell resolution, and to examine the dynamic regulation of the molecular networks directing epigenetic reprogramming in these cells.

2022-10-15 | GSE197334 | GEO

Construction of earthworm chromatin accessibility landscape at a single-cell level using CH-ATAC-seq

Project description:The assay for transposase-accessible chromatin using sequencing (ATAC-seq) at single-cell level can provide different perspectives of regulatory patterns based on cell type-specific accessible regions. While human genomic elements have been well studied, understanding how nuclear acid sequence regulates the expression of target genes in a genome-wide level in other organisms remains a major challenge. Batch effects, expensive machines are still constraints nowadays to build a cross-species landscape for further analysis, a platform with high throughput and low cost will be extremely required.Here, we constructed a cross-species accessible chromatin landscape by combinatorial-hybridization-based single-cell ATAC-seq, a single-cell ATAC-seq platform with high throughput and signal-noise ratio using fresh nuclei as input.

2024-01-15 | GSE232272 | GEO

Construction of Drosophila chromatin accessibility landscape at a single-cell level using CH-ATAC-seq

2024-01-15 | GSE232271 | GEO

Construction of zebrafish chromatin accessibility landscape at a single-cell level using CH-ATAC-seq

2024-01-15 | GSE232043 | GEO

Mapping the Drosophila developmental and aging atlas by single cell mRNA-seq

Project description:Single-cell mRNA sequencing (scRNA-seq) technologies are reshaping current cell-type classification system. In previous studies, we constructed the Mouse Cell Atlas (MCA) and Human Cell Landscape (HCL) to catalog all cell types by collecting scRNA-seq data. Howerver, the systematic study for organism-level dynamic changes of cellular states across fruit fly (Drosophila melanogaster) life span are still lacking. Here, we constructed the Drosophila cell Landscape covering different development periods using Microwell-seq protocol. The Drosophila cell landscape provides a valuable resource for studying cross-sepciess development, maturation and aging.

2022-07-23 | GSE198831 | GEO

Mapping the zebrafish developmental and aging atlas by single cell mRNA-seq

Project description:Single-cell mRNA sequencing (scRNA-seq) technologies are reshaping current cell-type classification system. In previous studies, we constructed the Mouse Cell Atlas (MCA) and Human Cell Landscape (HCL) to catalog all cell types by collecting scRNA-seq data. Howerver, the systematic study for organism-level dynamic changes of cellular states across zebrafish life span are still lacking. Here, we constructed the zebrafish cell Landscape covering different development periods using Microwell-seq protocol. The zebrafish cell landscape provides a valuable resource for studying cross-sepciess development, maturation and aging.

2022-07-23 | GSE198571 | GEO

Defining the dynamic chromatin landscape of nephron progenitors

Project description:Defining the dynamic chromatin landscape of nephron progenitors

| PRJNA513838 | ENA

Construction of the axolotl cell landscape using combinatorial hybridization sequencing at single cell resolution [scRNA-seq]

Project description:Here, we developed a single-cell sequencing method based on combinatorial hybridization to generate a tissue-based transcriptomic landscape of the neotenic and metamorphosed axolotl. We performed gene expression profiling of over 1 million single cells across 19 tissues to construct the first adult axolotl cell landscape. Comparison of single-cell transcriptomes between the tissues of neotenic and metamorphosed axolotls revealed the heterogeneity of non-immune parenchymal cells in different tissues and established their regulatory network. Furthermore, we described dynamic gene expression patterns during limb development in neotenic axolotls. This system-level single-cell analysis of molecular characteristics in neotenic and metamorphosed axolotls, serves as a resource to explore the molecular identity of the axolotl and facilitates better understanding of metamorphosis.

2022-06-17 | GSE201446 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data