Dataset Information

Bioinformatic prediction and characterization of proteins in Porphyra dentata by shotgun proteomics

ABSTRACT: Porphyra dentata is an edible red seaweed with high nutritional value. It is widely cultivated and consumed in east Asia and has vast economic benefits. Studies have found that P. dentata is rich in bioactive substances and is a potential natural resource. In this study, label-free shotgun proteomics was applied to identify and characterize complete harvest proteins in P. dentata. A total of 13,046 different peptides were identified and 419 target proteins were characterized.

ORGANISM(S): Environmental Samples <red Algae,phylum Rhodophyta>

SUBMITTER: Yongqiang Zhao

PROVIDER: PXD033319 | iProX | Thu Apr 21 00:00:00 BST 2022

REPOSITORIES: iProX

ACCESS DATA

Publications

Bioinformatic Prediction and Characterization of Proteins in Porphyra dentata by Shotgun Proteomics.

Yang Mingchang M Ma Lizhen L Yang Xianqing X Li Laihao L Chen Shengjun S Qi Bo B Wang Yueqi Y Li Chunsheng C Yang Shaoling S Zhao Yongqiang Y

Frontiers in nutrition 20220707

Porphyra dentata is an edible red seaweed with high nutritional value. It is widely cultivated and consumed in East Asia and has vast economic benefits. Studies have found that P. dentata is rich in bioactive substances and is a potential natural resource. In this study, label-free shotgun proteomics was first applied to identify and characterize different harvest proteins in P. dentata. A total of 13,046 different peptides were identified and 419 co-expression target protei ...[more]

PMID: 35873412

Similar Datasets

Project description:Contemporary Jews comprise an aggregate of ethno-religious communities whose worldwide members identify with each other through various shared religious, historical, and cultural traditions1,2. Historical evidence suggests common origins in the Middle East, followed by migrations leading to the establishment of communities of Jews in Europe, Africa, and Asia - in what is termed the Jewish Diaspora3-5. This complex demographic history imposes special challenges in attempting to address the genetic structure of the Jewish people6. While many genetic studies have shed light on Jewish diseases and origins, including those focusing on uniparentally- and biparentally-inherited markers7-16, genome-wide patterns of variation across the vast geographic span of Jewish Diaspora communities and their respective neighbors have yet to be addressed. Here we use high-density bead arrays to genotype individuals from 14 Jewish Diaspora communities, and compare these patterns of genome-wide diversity with those from 69 Old World non-Jewish populations, of which 25 have not been previously reported. These samples were carefully chosen to provide comprehensive comparisons between Jewish and non-Jewish populations in the Diaspora, as well as with non-Jewish populations from the Middle East and North Africa. Principal component and structure-like analyses identify previously unrecognized genetic substructure within the Middle East. Most Jewish samples form a remarkably tight sub-cluster that overlies Druze and Cypriot samples, but not samples from other Levantine populations or paired Diaspora host populations. In contrast, Ethiopian Jews (Beta Israel) and Bene Israel Indian Jews cluster with neighbouring autochthonous populations in Ethiopia and western India, respectively; despite a clear paternal link between the Bene Israel and the Levant. These results cast light on the variegated genetic architecture of the Middle East, and trace the origins of most Jewish Diaspora communities to the Levant. 466 samples are analysed on three different Illumina platforms.

Dataset Information

Bioinformatic prediction and characterization of proteins in Porphyra dentata by shotgun proteomics

Publications

Bioinformatic Prediction and Characterization of Proteins in <i>Porphyra dentata</i> by Shotgun Proteomics.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets