Proteomics

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ABPP-based identification of biochanin A targeted Protein in AML-12 cells


ABSTRACT: AML-12 cells were stimulated with 5 mM APAP for 3 hours, with one group treated with 20 μM Bio-A and the other left untreated. Following a 30-minute incubation, both groups received 20 μM Bio-A probe and DMSO for an additional 2 hours. Total protein was extracted, and protein concentration was quantified using the BCA assay. Pre-mixed Click reaction reagents (50 mmol/L azido-tetrazine, 1 mmol/L vitamin C sodium, and 1 mmol/L CuSO4, 100 mmol/L tris-hydroxypropyltriazolylmethylamine) were then added to the lysis buffer and allowed to react for 2 hours at room temperature. Proteins were precipitated with cold acetone at -20 °C and re-dissolved in PBS containing 1.5 % SDS. The solution was incubated with streptavidin beads for 4 hours at room temperature. The streptavidin beads were washed gently with 5 mL PBS containing 1% SDS (twice), 0.1% SDS (once), and 6 M urea (three times), followed by two washes with PBS. Proteins were digested with trypsin at room temperature. The resulting peptides were desalted on a C18 column, labeled with TMT reagents, and identified using liquid chromatography-tandem mass spectrometry (LC-MS/MS, Orbitrap Fusion Lumos, Thermo Scientific, MA, USA).

ORGANISM(S): Mus Musculus

SUBMITTER: Shenhai Gong  

PROVIDER: PXD056133 | iProX | Mon Sep 16 00:00:00 BST 2024

REPOSITORIES: iProX

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