Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

TMT-based serum N-glycoproteomic profiling of gastric cancer metastasis

ABSTRACT: This project contains raw LC-MS/MS data and processed pGlyco3 output files from a TMT6-labeled serum N-glycoproteomic study of human gastric cancer samples. TMT channels 126, 127 and 128 correspond to the non-metastasis group, while TMT channels 129, 130 and 131 correspond to the metastasis group. Glycopeptide identification and quantification were performed using pGlyco3.

ORGANISM(S): Homo Sapiens

SUBMITTER: Shifang Ren

PROVIDER: PXD080634 | iProX | Mon Jul 06 00:00:00 BST 2026

REPOSITORIES: iProX

ACCESS DATA

Json Xml

Similar Datasets

Sexual Dimorphism in the Extracellular and Pericellular Matrix of Articular Cartilage

Project description:Male and female collagen-enriched fraction of cartilage from bovine knees. Full thickness cartilage plugs without subchondral bone were digested with chondroitinase for 24 hours to remove proteoglycans. Cartilage was further decellularized with SDS. LUM1_811145: channels 126, 127, 128 female, channels 129, 130, 131 male LUM1_833734: channels 126, 127, 128 female, channels 129, 130, 131 male

| MSV000092997 | MassIVE

Neurons Sequester the Cholesterol-Inhibiting TFEB in Oligodendrocyte Cytoplasm to Safeguard Myelination and Neural Function

Project description:Samples ECL1_1260429_F1-F8 are TMT6plex samples fractionated into 8 fractions using the Pierce High pH Reversed-Phase Peptide Fractionation Kit. Samples are optic nerves protein lysates. Channels 126, 127, 128 are control samples (TFEBdPM-Halo) and channels 129, 130, 131 are mutant samples (Mog-Cre; TFEBdPM-Halo). Samples 1251765_F1-F8 are TMT6plex samples fractionated into 8 fractions using the Pierce High pH Reversed-Phase Peptide Fractionation Kit. Samples are day 14 in vitro differentiated oligodendrocytes protein lysates. Channels 126, 127, 128 are control samples (TFEBdPM-Halo) and channels 129, 130, 131 are mutant samples (Mog-Cre; TFEBdPM-Halo).

2025-07-28 | MSV000098661 | MassIVE

Autophagy collaborates with apoptosis pathways to control oligodendrocyte number

Project description:The samples are in vitro cultured oligodendrocyte precursor cells in differentiation medium for 3 days. There are 2 groups: D3HET (ATG5F/+ CNP-Cre, TMT channels 126, 127, 128) and D3KO (ATG5F/F; CNP-Cre, TMT channels 129, 130, 131), with each group comprising 3 biological replicates. Subsequently, all the samples were lysed and subjected to TMT (Tandem Mass Tag) labeling, high pH fractionation into 8 fractions (F1-F8).

2023-07-13 | MSV000092434 | MassIVE

RTNs and DP1 Knockdown in neurons

Project description:Quantitative proteomics results of RTNs-KD neurons or DP1-KD neurons (DIV5). Peptides derived from Untreated neurons (UNT) were chemically labeled with TMT-126, pSuper-neurons with TMT-127, shRNAs_RTNs-neurons with TMT-128 and shRNA_DP1-neurons with TMT-131.

2019-02-15 | PXD012264 | Pride

Low abundance of the matrix arm of complex I in the mitochondria predicts longevity

Project description:The mouse liver mitochondrial proteome was analysed in four different mouse groups (allocation of the samples to Exp1 and Exp2 in brackets): AL (ad libitum fed) C57Bl6 (Exp1 129, Exp1 130, Exp2 130), DR (dietary restriction) C57Bl6 (Exp1 126, Exp1 127, Exp1 128), AL ICRFa (Exp2 128, Exp2 129) and old ICRFa (Exp2 126, Exp2 127). To achieve quantitative standardisation between Exp1 and Exp2, all 10 samples were pooled and one portion of the pool was anlaysed in each Exp (Exp1 131 and Exp2 131). Following tryptic digest and TMT 6-plex labelling, samples were separated by OffGel electrophoresis and all fractions were subsequently analysed by LCMSMS on an Orbitrap LTQ XL. One survey scan (res. 30,000) was followed by a high energy HCD scan (res. 6000) and a low energy CID scan in the LTQ. HCD data were used for the quantitation and CID data for the identification of peptides. Data were searched using Mascot (v. 2.2) through the Proteome Discoverer interface. Peptide raw quantitations were extracted as text files and further processed using dpeaqms (http://r-forge.r-project.org/projects/dpeaqms/) to obtain probability values for the differences in protein amounts for specific proteins between the different animal groups.

2014-03-18 | PXD000272 | Pride

Arabidopsis thaliana mutant sr45-1 inflorescence protein TMT-6

Project description:Arabidopsis thaliana mutant sr45-1 has an altered flower shape. sr45 is a splicing regulator. In this study, we examined the proteins from inflorescence of sr45-1 mutant plants and wild-type. Wild type TMT labels: 126, 128, 130. sr45-1 TMT labels: 127, 129, 131.

2019-04-26 | MSV000083728 | MassIVE

S-nitrosoproteome analysis of rice leaves in response to Magnaporthe oryzae infection

Project description:S-nitrosoproteome of leaves obtained from two rice cultivars Dongjin (relatively resistant) and Nipponbare (susceptible) to Magnaporthe oryzae strain PO6-6 was investigated using a iodo-TMT six plex kit. MS/MS data was acquired using two MS intruments: QExactive™ Orbitrap High-Resolution Mass Spectrometer (MS) (Thermo Fisher Scientific, MA, USA) or with Orbitrap Exploris™ 240 The labeling was performed in the following order: iodoTMT reagent 126: Dongjin mock iodoTMT reagent 127: Dongjin infected iodoTMT reagent 128: Dongjin mock+infected+GSNO iodoTMT reagent 129: Nipponbare mock iodoTMT reagent 130: Nipponbare infected iodoTMT reagent 131: Nipponbare mock+infected+GSNO

2025-12-20 | PXD059677 | Pride

Bean leaves treated with benzothiadiazole (BTH)

Project description:Bean leaves treated with BTH or water. 126 = control R1, 127 = BTH R1, 128 = control R2, 129 = BTH R2, 130 = control R3, 131 = BTH R3

2019-07-31 | MSV000084162 | MassIVE

Structural Organization of the Retriever-CCC endosomal recycling complex

Project description:PM proteomics by TMT6plex, comparing WT to EV. 126: EV, rep1 127: EV, rep2 128: EV, rep3 129: WT, rep1 130: WT, rep2 131: WT, rep3

2023-06-05 | MSV000092103 | MassIVE

Insights into brevetoxin biosynthesis and endogenous function by comparative quantitative proteomics of Karenia brevis strains

Project description:High toxin producing (HT) and a low toxin producing (LT) strains of Karenia brevis both derived from the Wilson strain. LUM2_781143: 126: HT labeled before reduction with TCEP 127: LT labeled before reduction with TCEP 130: HT labeled after reduction with TCEP 131: LT labeled after reduction with TCEP LUM2_781144: 128: HT labeled before reduction with TCEP 129: LT labeled before reduction with TCEP 130: HT labeled after reduction with TCEP 131: LT labeled after reduction with TCEP LUM2_781145: 126: HT labeled before reduction with TCEP 127: LT labeled before reduction with TCEP 128: HT labeled after reduction with TCEP 129: LT labeled after reduction with TCEP LUM2_800258: 126: HT labeled before reduction with TCEP 127: LT labeled before reduction with TCEP 129: LT labeled after reduction with TCEP 130: HT labeled after reduction with TCEP

| MSV000095971 | MassIVE

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data